Browse Element(s) Details


OsAffx.25286.1.S1_at

Description tigr:9631.m02911
TID=OsAffx.25286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2983010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29770OsAffx.25285.1.S1_at11/113+16929907..16930680EF hand family protein, expressed
LOC_Os03g29790OsAffx.22947.1.S1_x_at11/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.3.S1_x_at5/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.2.S1_x_at3/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29790OsAffx.22947.5.S1_x_at1/113+16937075..16943438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29810Os.34521.1.S1_at11/113+16949262..16952730Clp protease family protein, expressed
LOC_Os03g29830Os.28409.4.S1_s_at11/113+16954199..16957297expressed protein
LOC_Os03g29830OsAffx.25286.1.S1_at10/113+16954199..16957297expressed protein
LOC_Os03g29840OsAffx.25287.1.S1_at11/113+16960984..16961997hypothetical protein
LOC_Os03g29850Os.15732.1.S1_s_at11/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.17065.1.S1_at8/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_x_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29850Os.57162.1.S1_at1/113+16963021..16966257zinc transporter, putative, expressed
LOC_Os03g29864OsAffx.25288.1.S1_s_at11/113+16969392..16977744retrotransposon protein, putative, unclassified, expressed
LOC_Os03g29880Os.14919.1.S1_at4/113+16979721..16984701retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25286.1.S1_at--1011--5071Chr03:16955983..16956007 (25 bp)
GCAGCCATCTCTGAGATAGCTCGAA
LOC_Os03g29830
OsAffx.25286.1.S1_at--855--4431Chr03:16955986..16956010 (25 bp)
GCCATCTCTGAGATAGCTCGAATGT
LOC_Os03g29830
OsAffx.25286.1.S1_at--103--6051Chr03:16955995..16956019 (25 bp)
GAGATAGCTCGAATGTCAGCCCACA
LOC_Os03g29830
OsAffx.25286.1.S1_at--975--271Chr03:16955998..16956022 (25 bp)
ATAGCTCGAATGTCAGCCCACAGGC
LOC_Os03g29830
OsAffx.25286.1.S1_at--565--5271Chr03:16956005..16956029 (25 bp)
GAATGTCAGCCCACAGGCTTGAACT
LOC_Os03g29830
OsAffx.25286.1.S1_at--567--8731Chr03:16956008..16956032 (25 bp)
TGTCAGCCCACAGGCTTGAACTGGA
LOC_Os03g29830
OsAffx.25286.1.S1_at--864--1651Chr03:16956012..16956036 (25 bp)
AGCCCACAGGCTTGAACTGGAGCAG
LOC_Os03g29830
OsAffx.25286.1.S1_at--168--4931Chr03:16956021..16956045 (25 bp)
GCTTGAACTGGAGCAGCCAGTGAAT
LOC_Os03g29830
OsAffx.25286.1.S1_at--784--5931NONE
GAGCAGCCAGTGAATGAGGAAGAAA
NONE
OsAffx.25286.1.S1_at--481--2371Chr03:16957231..16957255 (25 bp)
AAACCGACCTGTATGTTTGTTCCAG
LOC_Os03g29830
OsAffx.25286.1.S1_at--75--751Chr03:16957243..16957267 (25 bp)
ATGTTTGTTCCAGTAGTCTACCTAG
LOC_Os03g29830
Target Sequence 
GCAGCCATCTCTGAGATAGCTCGAATGTCAGCCCACAGGCTTGAACTGGAGCAGCCAGTGAATGAGGAAGAAAAGACTAG
AAGTAATGAACATGGTAGTCCAAAGTTGAAGAAGTAATGTTTTATAGTTAAACCTGACGATCCATTGCAGACATCTTGCG
CCGTCACTCCCGTCAGCTAGTGCAGAATTGGGAGCTCCCTTGTAGTAGTATTACAGGCATTCAATCTATTTGTGCCATCT
AGTGCAAAAATTGCGTCTCTTGCCCTCTGTAACGCTATTTTATCTTGGTACGTGGGTAAGCAAAAGCTTGCCGTGATAAA
ATACAGCGAATTATTTTATTATCATGCTGCGCTTTAGCGGGTTTCGATCTAAATATAAAACTACAGCTACTTGCTCTATA
CAGGAAGTTGGGTTTGGCTGTTTGAGTTCCTGTTGTCAACCTTAGAAAACTTTAGCTGTTAATATGTGTAAACGTGTATG
GATTGTAAAGGGTTCAGAACATCCTTTTATTCTAAAGGTCCCAAGAACAGGAAAAAACCGACCTGTATGTTTGTTCCAGT
AGTCTACCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis