Browse Element(s) Details


OsAffx.25418.1.S1_at

Description tigr:9631.m03703
TID=OsAffx.25418.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative secretory carrier membrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3860011/11Secretory carrier-associated membrane protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38550NANA3+21350711..21351070retrotransposon protein, putative, unclassified
LOC_Os03g38560Os.28943.1.S1_x_at1/113+21352197..21355235retrotransposon protein, putative, unclassified
LOC_Os03g38570NANA3+21355861..21362033retrotransposon protein, putative, unclassified
LOC_Os03g38580Os.51675.1.S1_at7/113+21363903..21365867pentatricopeptide, putative, expressed
LOC_Os03g38590Os.6073.1.S1_at11/113+21370785..21375180Secretory carrier-associated membrane protein, putative, expressed
LOC_Os03g38600OsAffx.25418.1.S1_at11/113+21375579..21380097Secretory carrier-associated membrane protein, putative
LOC_Os03g38600Os.50423.1.S1_x_at2/113+21375579..21380097Secretory carrier-associated membrane protein, putative
LOC_Os03g38610OsAffx.13235.1.S1_at11/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38610OsAffx.26219.1.S1_x_at1/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38620OsAffx.13236.1.S1_x_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.13236.1.S1_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.49936.2.A1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.15708.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.19857.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.18103.1.S1_x_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.52238.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.33601.3.S1_x_at1/113+21384891..21388624hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045045biological_processsecretory pathway
GO:0005739cellular_componentmitochondrion
GO:0005386molecular_functioncarrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25418.1.S1_at--431--9311Chr03:21378076..21378100 (25 bp)
TCCCCGTCATTCATGTTGATATCTC
LOC_Os03g38600
OsAffx.25418.1.S1_at--640--451Chr03:21378056..21378080 (25 bp)
ATCTCAAATGACATACCCGTGCACT
LOC_Os03g38600
OsAffx.25418.1.S1_at--577--5032Chr12:14463451..14463470 (20 bp)
GCAGTATGTCGCTTTTGCATCACTC
NONE
OsAffx.25418.1.S1_at--533--8611Chr03:21377879..21377903 (25 bp)
TGGTGATATGCCTCTTCTGGAACAT
LOC_Os03g38600
OsAffx.25418.1.S1_at--539--10611Chr03:21377689..21377713 (25 bp)
TTCTGGCTGCCATATACTTCATTAC
LOC_Os03g38600
OsAffx.25418.1.S1_at--360--611Chr03:21377661..21377685 (25 bp)
ATGCCCAGGTGCCTATTTTTCATGG
LOC_Os03g38600
OsAffx.25418.1.S1_at--137--10371Chr03:21377646..21377670 (25 bp)
TTTTTCATGGTACCGGCCTCTTTAT
LOC_Os03g38600
OsAffx.25418.1.S1_at--161--271Chr03:21377390..21377414 (25 bp)
ATATGGGTGGTTCTTCCTGTTCTAC
LOC_Os03g38600
OsAffx.25418.1.S1_at--135--4851Chr03:21376866..21376885 (20 bp)
GCTACAATGGTGCAGTCGGGATATT
LOC_Os03g38600
OsAffx.25418.1.S1_at--394--7871Chr03:21375798..21375822 (25 bp)
GGTTTCGCGATGTTCGTCCTTGAGA
LOC_Os03g38600
OsAffx.25418.1.S1_at--196--7271Chr03:21375783..21375807 (25 bp)
GTCCTTGAGACGTTGCTGAGCATAT
LOC_Os03g38600
Target Sequence 
TCCCCGTCATTCATGTTGATATCTCAAATGACATACCCGTGCACTTGCAGCGAGTGCAGTATGTCGCTTTTGCATCACTC
CTAGGGTTGGTGATATGCCTCTTCTGGAACATAATATGTGTCAGTGCTATTGCGATTATGTGGGGCGACCCTAGGGCCTG
GTTTCTGGCTGCCATATACTTCATTACAGGATGCCCAGGTGCCTATTTTTCATGGTACCGGCCTCTTTATCGTGCCATGA
GGAAAGAAAGTGCTTTCAGATATGGGTGGTTCTTCCTGTTCTACTTTTTCCATATATCTTTCTGCATCTATGCAGCCATT
TCTCCATCAATTTTTTTCGTTGGAAGATCATTGACGGGAATTTTTCAAGCGATCAACGTGATAGGCTACAATGGTGCAGT
CGGGATATTATTCTTCCTGGGTTTCGCGATGTTCGTCCTTGAGACGTTGCTGAGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis