Browse Element(s) Details


OsAffx.25629.1.S1_at

Description tigr:9631.m04761
TID=OsAffx.25629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative LRR receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4888011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48810Os.9396.1.S1_at11/113+27761365..27764926permease 1, putative, expressed
LOC_Os03g48820OsAffx.13415.1.S1_at11/113+27765109..27766344hypothetical protein
LOC_Os03g48830Os.56044.1.S1_at11/113+27769185..27772095expressed protein
LOC_Os03g48840Os.10994.1.S1_at11/113+27772221..27774889ribosomal protein L18 family protein, putative, expressed
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein
LOC_Os03g48920Os.27770.1.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48920Os.27770.3.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48930Os.9323.1.S1_at11/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48930OsAffx.24763.1.S1_at1/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48940Os.50932.1.S1_at10/113+27810937..27821033Chloride channel protein CLC-d, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0007165biological_processsignal transduction
GO:0009887biological_processorgan morphogenesis
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0030155biological_processregulation of cell adhesion
GO:0042831biological_processdefense response to pathogenic fungi
GO:0051301biological_processcell division
GO:0005576cellular_componentextracellular region
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25629.1.S1_at--143--8091Chr03:27788160..27788184 (25 bp)
GGAGCTCCCTGACTCGGTGAAAACG
LOC_Os03g48880
OsAffx.25629.1.S1_at--1138--5511Chr03:27788142..27788166 (25 bp)
GAAAACGGACTTCGCCGAGGCAGCT
LOC_Os03g48880
OsAffx.25629.1.S1_at--738--7331Chr03:27788090..27788114 (25 bp)
GTGCACGGCCCTTGCGATCAGGAGA
LOC_Os03g48880
OsAffx.25629.1.S1_at--4--4271Chr03:27788027..27788051 (25 bp)
CCGGAGATTCTCGACGTTAGCTGGA
LOC_Os03g48880
OsAffx.25629.1.S1_at--701--1391Chr03:27787998..27788022 (25 bp)
AGACGATCCGTGCAACGGTTGGCTC
LOC_Os03g48880
OsAffx.25629.1.S1_at--986--10851Chr03:27787980..27788004 (25 bp)
TTGGCTCGGTATACACTGCGGCGAT
LOC_Os03g48880
OsAffx.25629.1.S1_at--24--3711Chr03:27787751..27787775 (25 bp)
CTAGAGGGAACCGTGCTGAGCGTCC
LOC_Os03g48880
OsAffx.25629.1.S1_at--45--8931Chr03:27787735..27787759 (25 bp)
TGAGCGTCCGGCACGATGTGCTGAT
LOC_Os03g48880
OsAffx.25629.1.S1_at--370--1331Chr03:27787694..27787718 (25 bp)
AGAGGAGGGCTCAACGTGACCGCCA
LOC_Os03g48880
OsAffx.25629.1.S1_at--717--9491Chr03:27787643..27787667 (25 bp)
TCTCGGTTCCAGCTCTCAGAGGCAA
LOC_Os03g48880
OsAffx.25629.1.S1_at--681--9651Chr03:27787628..27787652 (25 bp)
TCAGAGGCAACAACGCCATTCCTTA
LOC_Os03g48880
Target Sequence 
GGAGCTCCCTGACTCGGTGAAAACGGACTTCGCCGAGGCAGCTGTCAAGGGGAGCTTCTGCCGCCTGGACGTGCACGGCC
CTTGCGATCAGGAGACCAGCTCTCTCCTGTCGGTAGCCGCCGCGTTCCACTACCCGGAGATTCTCGACGTTAGCTGGAGG
CGAGACGATCCGTGCAACGGTTGGCTCGGTATACACTGCGGCGATGGCGATGGCGGCGGCGGCGGGCGGAACAAGGTGAC
CGGGGTGAACCTGTCACGCCTCGGCCTCAACGGGACCATCGACCCGGCCTTCGCCTCGCTGCTGTATCTGGAGGCGATCA
TCCTCGCGGGCAACAACCTCACCGGGACGGTCCCGGCGTCCATCCTGCAGATGCCGTCTCTCCGCGTGCTCGACGTCTCC
AACAACGCGCTAGAGGGAACCGTGCTGAGCGTCCGGCACGATGTGCTGATCTTGGCTGATGGTAACAGAGGAGGGCTCAA
CGTGACCGCCATTGCTGCCTCTGGCAGCTTCTCGTCTTCTCGGTTCCAGCTCTCAGAGGCAACAACGCCATTCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis