Browse Element(s) Details


OsAffx.25734.1.S1_at

Description gb:NM_184909.1
DB_XREF= gi:34896907
TID=OsAffx.25734.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0070N04.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5648011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein
LOC_Os03g56500Os.17985.1.S1_s_at11/113+32132503..32134032expressed protein
LOC_Os03g56500Os.27147.1.S1_at11/113+32132503..32134032expressed protein
LOC_Os03g56510OsAffx.25736.1.S1_at11/113+32135324..32136445F-box domain containing protein
LOC_Os03g56520OsAffx.3624.1.S1_at11/113+32139531..32140222hypothetical protein
LOC_Os03g56530OsAffx.22664.1.S1_at10/113+32140799..32146457retrotransposon protein, putative, unclassified
LOC_Os03g56540Os.5581.1.S1_at10/113+32147828..32149791DNAJ protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25734.1.S1_at--116--4231Chr03:32126837..32126861 (25 bp)
CCGCAGTGATGGTTTCACCGGCGGC
LOC_Os03g56480
OsAffx.25734.1.S1_at--291--4791Chr03:32126797..32126821 (25 bp)
GCTCGATGCAAGAACGTCCGGCGAA
LOC_Os03g56480
OsAffx.25734.1.S1_at--917--351Chr03:32126792..32126816 (25 bp)
ATGCAAGAACGTCCGGCGAAGTCGA
LOC_Os03g56480
OsAffx.25734.1.S1_at--926--5451Chr03:32126786..32126810 (25 bp)
GAACGTCCGGCGAAGTCGACAAGTC
LOC_Os03g56480
OsAffx.25734.1.S1_at--99--4251Chr03:32126780..32126804 (25 bp)
CCGGCGAAGTCGACAAGTCCGTGGT
LOC_Os03g56480
OsAffx.25734.1.S1_at--1135--4331Chr03:32126734..32126758 (25 bp)
CCATGTGCTTACTGCAGCAGCTGCT
LOC_Os03g56480
OsAffx.25734.1.S1_at--817--1511Chr03:32126683..32126707 (25 bp)
AGCAGCGATGAAAGCAACGGCGAGC
LOC_Os03g56480
OsAffx.25734.1.S1_at--10--611Chr03:32126567..32126591 (25 bp)
ATGCCGCCTACGAAGCTCGCAGGCG
LOC_Os03g56480
OsAffx.25734.1.S1_at--700--4151Chr03:32126398..32126422 (25 bp)
CGCCGCAGAAGCTCGAACCAAGGTG
LOC_Os03g56480
OsAffx.25734.1.S1_at--1035--2671Chr03:32126390..32126414 (25 bp)
AAGCTCGAACCAAGGTGGCCACGGA
LOC_Os03g56480
OsAffx.25734.1.S1_at--362--8111Chr03:32126326..32126350 (25 bp)
GGACTTCGCCATAGCCTACCTGTTC
LOC_Os03g56480
Target Sequence 
CCGCAGTGATGGTTTCACCGGCGGCGACTTCTCCGCCGCCGCTCGATGCAAGAACGTCCGGCGAAGTCGACAAGTCCGTG
GTGGTGATCAACGACGAGCCTGTCCATGTGCTTACTGCAGCAGCTGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
GATGAAAGCAACGGCGAGCGACTCCGGCGGGAAGAAGGACACGGCGCACGGCGGCGGTAGCAGGTGCATGGTGATTCGGG
AGGTCGGGGAGGAGGAAGAAGCATCACACCATGCCGCCTACGAAGCTCGCAGGCGCGCCGAGGCGTTCCACGCCACCATC
AAAGCCGCCACCGCCGCAGAAGCTCCATCCCAGCCGCCGCCGGCCGATCGCCGCCATGGCTCGGGGCAGTCCGCCGCCCT
CGAGGCTCGCACCCAGCCGCCGCCTGCTACCACCAACGCCGCCGCAGAAGCTCGAACCAAGGTGGCCACGGAGCGACGGC
GTGGCTCGGAGCCGAGCGCGGCGGACATGGCGGACTTCGCCATAGCCTACCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis