Browse Element(s) Details


OsAffx.26199.1.S1_x_at

Description tigr:9632.m02667
TID=OsAffx.26199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kinesin motor domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2826011/11Kinesin-related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28220OsAffx.14013.2.S1_at10/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.30648.1.S1_at3/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.31267.1.S1_at2/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.29480.2.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.19695.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220Os.57082.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28234Os.50454.1.S2_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.2.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_x_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28250Os.9817.1.S1_at11/114+16506608..16507443cystatin, putative, expressed
LOC_Os04g28260OsAffx.26199.1.S1_x_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.26199.1.S1_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.2413.1.S1_x_at7/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.11796.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.28358.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28270OsAffx.26200.1.S1_at11/114+16526236..16526750hypothetical protein
LOC_Os04g28270Os.9328.1.S1_at1/114+16526236..16526750hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26199.1.S1_x_at--815--1511Chr04:16519134..16519441 (25 bp)
AGCAGAAGCACTTGCCCAGAGGCGA
LOC_Os04g28260
OsAffx.26199.1.S1_x_at--526--3771Chr04:16519538..16519562 (25 bp)
CTCTCGGAATCATCTCATCATCAAG
LOC_Os04g28260
OsAffx.26199.1.S1_x_at--282--9911Chr04:16519567..16519591 (25 bp)
TACTCTGGCCATTGAAGCTTGCGAC
LOC_Os04g28260
OsAffx.26199.1.S1_x_at--816--6851Chr04:16519672..16519696 (25 bp)
GTTTGAGGTCTCCAAGAGCACTGAT
LOC_Os04g28260
OsAffx.26199.1.S1_x_at--1093--1351Chr04:16519686..16519710 (25 bp)
AGAGCACTGATCTCAACTCGTGGTT
LOC_Os04g28260
OsAffx.26199.1.S1_x_at--727--5791Chr04:16519694..16519718 (25 bp)
GATCTCAACTCGTGGTTTTCCGGGT
LOC_Os04g28260
OsAffx.26199.1.S1_x_at--761--10271Chr04:16519710..16519734 (25 bp)
TTTCCGGGTACGACAAATGTAACAT
LOC_Os04g28260
OsAffx.26199.1.S1_x_at--760--8751Chr04:16519769..16519793 (25 bp)
TGTACCTTTGTATTGCTAGCATTGC
LOC_Os04g28260
OsAffx.26199.1.S1_x_at--745--9051Chr04:16519791..16519815 (25 bp)
TGCATGTTGTACCACCAGCTGGTGA
LOC_Os04g28260
OsAffx.26199.1.S1_x_at--751--7011Chr04:16519856..16519880 (25 bp)
GTACTACCTCTTCACTGTCTTGTGA
LOC_Os04g28260
OsAffx.26199.1.S1_x_at--759--1071Chr04:16519883..16519907 (25 bp)
AGGGCGCGGCAAGATTCTTCGGATT
LOC_Os04g28260
Target Sequence 
AGCAGAAGCACTTGCCCAGAGGCGAGCATTGTTGGCAGAGCAGGAGACGGAGAAAGCGTACCAGGAGATTGATAACTTGA
AAAAGAACTACGACCAGGAAATCGTTGCCCTAAACCAGCGCCTCTCGGAATCATCTCATCATCAAGAAACTACTCTGGCC
ATTGAAGCTTGCGACATGGAGACTACAAAGTATGATACGGCTGGGAGCCCCGGTGACCAGCAATGGCGGGAGGAGTTCAA
CCAGCAGGGCGGGTCGTTTGAGGTCTCCAAGAGCACTGATCTCAACTCGTGGTTTTCCGGGTACGACAAATGTAACATCT
GATGATGATTTGCACACTTTTGTTCAGTTCTTTGTACCTTTGTATTGCTAGCATTGCATGTTGTACCACCAGCTGGTGAG
CACAAGAGAGGAAGAAGAGAGTTAATCCTGAAGATGTGTGTACTACCTCTTCACTGTCTTGTGAGGAGGGCGCGGCAAGA
TTCTTCGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26199.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis