Browse Element(s) Details


OsAffx.26322.1.S1_at

Description tigr:9632.m03295
TID=OsAffx.26322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3430011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34260OsAffx.447.1.S1_at3/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260Os.46715.1.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260OsAffx.22947.2.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34270Os.49208.1.S1_at11/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34270Os.15523.1.S1_at1/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34280OsAffx.14130.1.S1_at11/114+20577517..20577999expressed protein
LOC_Os04g34290OsAffx.26321.1.S1_at11/114+20581578..20584028D-mannose binding lectin family protein, expressed
LOC_Os04g34300OsAffx.26322.1.S1_at11/114+20591822..20594248D-mannose binding lectin family protein
LOC_Os04g34309NANA4+20595451..20596078NA
LOC_Os04g34320OsAffx.26323.1.S1_at11/114+20597959..20600264S-locus glycoprotein family protein
LOC_Os04g34330OsAffx.14131.1.S1_at11/114+20602696..20605300D-mannose binding lectin family protein
LOC_Os04g34340OsAffx.26324.1.S1_at10/114+20610346..20611681hypothetical protein
LOC_Os04g34350OsAffx.22947.2.S1_x_at9/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.1.S1_x_at7/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.3.S1_x_at6/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.5.S1_x_at3/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26322.1.S1_at--378--7771Chr04:20593259..20593283 (25 bp)
GGTGACACTTTGAAAGATTCTCAGT
LOC_Os04g34300
OsAffx.26322.1.S1_at--570--7671Chr04:20593292..20593316 (25 bp)
GGGATTATTGCATTTGGATACATTA
LOC_Os04g34300
OsAffx.26322.1.S1_at--665--811Chr04:20593805..20593829 (25 bp)
ATGGTGAGAGGCACCGCAGGTTACC
LOC_Os04g34300
OsAffx.26322.1.S1_at--29--7731Chr04:20593850..20593874 (25 bp)
GGTGTTCCTATTACACTAAAAGTTG
LOC_Os04g34300
OsAffx.26322.1.S1_at--882--8011Chr04:20593920..20593944 (25 bp)
GGAGGAACTCACGTACCTCATGTTC
LOC_Os04g34300
OsAffx.26322.1.S1_at--137--6991Chr04:20593932..20593956 (25 bp)
GTACCTCATGTTCTTGTGGCGGTGA
LOC_Os04g34300
OsAffx.26322.1.S1_at--593--9591Chr04:20593943..20593967 (25 bp)
TCTTGTGGCGGTGATCATGATGTTT
LOC_Os04g34300
OsAffx.26322.1.S1_at--186--8871Chr04:20593960..20593984 (25 bp)
TGATGTTTATTTTCCGGTGCTTGTA
LOC_Os04g34300
OsAffx.26322.1.S1_at--342--9271Chr04:20593972..20593996 (25 bp)
TCCGGTGCTTGTAGCCCGTAAGCTT
LOC_Os04g34300
OsAffx.26322.1.S1_at--593--4751Chr04:20594060..20594084 (25 bp)
GCTGAAATAGCTTGCAAGGTAGCGT
LOC_Os04g34300
OsAffx.26322.1.S1_at--204--2951Chr04:20594182..20594206 (25 bp)
AAGGCTCCTTGAAGCAATTGCTGCT
LOC_Os04g34300
Target Sequence 
GGTGACACTTTGAAAGATTCTCAGTTTTGCAATGGGATTATTGCATTTGGATACATTAATTTGCAACGCGCAACTAAAAA
TTTCTCAGAGAAGCTCGGGGGAGATTTTGGGATGGCAAAGCTTTTGGGAAGGGATTTTAGCCGAGTTTTGACTATGGTGA
GAGGCACCGCAGGTTACCTTGCACCTAAATGGATTAGTGGTGTTCCTATTACACTAAAAGTTGATGTTTACAGCTATGGG
ATGGTCTTGCTAGAAATAATATCAGGAAGGAGGAACTCACGTACCTCATGTTCTTGTGGCGGTGATCATGATGTTTATTT
TCCGGTGCTTGTAGCCCGTAAGCTTCTTGATGGAGATATGGGTGGTTTGGTTGATTATAGATTAGATGGTGAGATCGACA
TAAAGGAGGCTGAAATAGCTTGCAAGGTAGCGTGTTGGTGCATTCAAGACAATGAGTTTAATCGACCAACAATGGGAGGT
GTGGTTCAGATTCTCGAGGGTCTAGTTGAAATCAACATGCCCCCAATGCCAAGGCTCCTTGAAGCAATTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis