Browse Element(s) Details


OsAffx.26551.1.S1_at

Description tigr:9632.m04885
TID=OsAffx.26551.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g502082/11phosphoenolpyruvate carboxykinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50184OsAffx.26547.1.S1_at11/114+29725003..29725404hypothetical protein
LOC_Os04g50188OsAffx.26548.1.S1_at11/114+29726865..29727200hypothetical protein
LOC_Os04g50192OsAffx.25036.1.S1_at11/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50192OsAffx.25036.2.S1_at4/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50196OsAffx.26549.1.S1_at11/114+29734667..29734984hypothetical protein
LOC_Os04g50200OsAffx.26550.1.S1_at11/114+29739017..29740549F-box protein interaction domain containing protein
LOC_Os04g50204Os.6872.2.S1_at11/114+29745888..29749073protein transport protein, putative, expressed
LOC_Os04g50208Os.26838.1.S1_at11/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50208OsAffx.26551.1.S1_at2/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50212OsAffx.19217.1.S1_x_at2/114+29754217..29754759hypothetical protein
LOC_Os04g50216Os.10083.1.S1_at11/114+29756150..29758746Gtk16 protein, putative, expressed
LOC_Os04g50660Os.27704.1.A1_at11/114+29762517..29769070U3 small nucleolar RNA-associated protein 13, putative, expressed
LOC_Os04g50670OsAffx.26553.2.S1_at11/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_x_at7/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_at6/114+29770077..29771979hypothetical protein
LOC_Os04g50680OsAffx.26554.1.S1_at11/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50680Os.57514.1.S1_x_at1/114+29776877..29778083Myb-like DNA-binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26551.1.S1_at--80--9771Chr04:29751492..29751516 (25 bp)
TAATGTGCTATTCGCCACAAAGGCT
LOC_Os04g50208
OsAffx.26551.1.S1_at--647--8771Chr04:29751454..29751478 (25 bp)
TGTTTACCAGACCAACTCAAGTTAT
LOC_Os04g50208
OsAffx.26551.1.S1_at--1085--10031Chr04:29750088..29750109 (22 bp)
TAGAGGACACTATTCCTTCTGGCAC
NONE
OsAffx.26551.1.S1_at--961--10211Chr04:29750078..29750102 (25 bp)
TATTCCTTCTGGCACAGCTTTGTGG
NONE
OsAffx.26551.1.S1_at--668--8531Chr04:29750060..29750080 (21 bp)
TGGACTACTGGGATCACAAAGAGAT
NONE
OsAffx.26551.1.S1_at--596--6031Chr04:29749931..29749955 (25 bp)
GAGATGTCAGATCTTCACATGGTTT
NONE
OsAffx.26551.1.S1_at--305--6431Chr04:29749922..29749946 (25 bp)
GATCTTCACATGGTTTCACTGAGGA
NONE
OsAffx.26551.1.S1_at--616--8611Chr04:29749869..29749893 (25 bp)
TGGTGGCCTACGCTTCTCCTTTATC
NONE
OsAffx.26551.1.S1_at--954--10411Chr04:29749849..29749873 (25 bp)
TTATCTCCAGTTCCATCAACAAGAG
NONE
OsAffx.26551.1.S1_at--102--2791Chr04:29749829..29749853 (25 bp)
AAGAGAAGCGCTGGACGTCTCTCCA
NONE
OsAffx.26551.1.S1_at--646--3471Chr04:29749583..29749607 (25 bp)
CAGGTCCTTGTTGCAACGGTCGAGA
NONE
Target Sequence 
TAATGTGCTATTCGCCACAAAGGCTAGGGAACCAAATTTGTTTACCAGACCAACTCAAGTTATTATTGTATCATCAGATA
GTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGCTTACCATTTCTTAGCAGGATATTGTGATGGT
AAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAA
AGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAA
TAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGGACACTATTCCTTCTGGCACAGCTTT
GTGGACTACTGGGATCACAAAGAGATGTCAGATCTTCACATGGTTTCACTGAGGAGGAACTGGTCCGGTGGTCCCCTTGA
CCATGGTGGCCTACGCTTCTCCTTTATCTCCAGTTCCATCAACAAGAGAAGCGCTGGACGTCTCTCCAGGTCCTTGTTGC
AACGGTCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis