Browse Element(s) Details


OsAffx.26585.1.S1_at

Description tigr:9632.m05146
TID=OsAffx.26585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5307011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53040Os.51599.2.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.1.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.2.A1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040OsAffx.18229.1.S1_x_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.53813.1.S1_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53050OsAffx.30177.1.S1_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050OsAffx.30177.1.S1_x_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050Os.37971.1.A1_at1/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53060OsAffx.14390.1.S1_at11/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53060OsAffx.26587.1.S1_x_at2/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53070OsAffx.26585.1.S1_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070OsAffx.26585.1.S1_s_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070Os.55000.1.S1_x_at1/114+31390439..31391773hypothetical protein
LOC_Os04g53080OsAffx.26586.1.S1_at8/114+31394274..31394633hypothetical protein
LOC_Os04g53090Os.38395.3.S1_x_at11/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.2.S1_x_at9/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.4.S1_x_at5/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.1.S1_at1/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53110OsAffx.14392.1.S1_at10/114+31410130..31414368hypothetical protein
LOC_Os04g53110Os.52574.2.S1_x_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53110OsAffx.28164.2.S1_at1/114+31410130..31414368hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26585.1.S1_at--147--5711Chr04:31391253..31391277 (25 bp)
GACTACCACACCGTCATCAAGTGGG
LOC_Os04g53070
OsAffx.26585.1.S1_at--397--2031Chr04:31391252..31391276 (25 bp)
ACTACCACACCGTCATCAAGTGGGA
LOC_Os04g53070
OsAffx.26585.1.S1_at--873--9971Chr04:31391250..31391274 (25 bp)
TACCACACCGTCATCAAGTGGGAGA
LOC_Os04g53070
OsAffx.26585.1.S1_at--216--1711Chr04:31391249..31391273 (25 bp)
ACCACACCGTCATCAAGTGGGAGAT
LOC_Os04g53070
OsAffx.26585.1.S1_at--339--3311Chr04:31391247..31391271 (25 bp)
CACACCGTCATCAAGTGGGAGATTA
LOC_Os04g53070
OsAffx.26585.1.S1_at--1150--2151Chr04:31391246..31391270 (25 bp)
ACACCGTCATCAAGTGGGAGATTAC
LOC_Os04g53070
OsAffx.26585.1.S1_at--467--1771Chr04:31391244..31391268 (25 bp)
ACCGTCATCAAGTGGGAGATTACCC
LOC_Os04g53070
OsAffx.26585.1.S1_at--443--7111Chr04:31391241..31391265 (25 bp)
GTCATCAAGTGGGAGATTACCCTGG
LOC_Os04g53070
OsAffx.26585.1.S1_at--197--3471Chr04:31391239..31391263 (25 bp)
CATCAAGTGGGAGATTACCCTGGAG
LOC_Os04g53070
OsAffx.26585.1.S1_at--107--9731Chr04:31391237..31391261 (25 bp)
TCAAGTGGGAGATTACCCTGGAGGA
LOC_Os04g53070
OsAffx.26585.1.S1_at--657--311Chr04:31390516..31390723 (25 bp)
ATACATCGGCCGATTCGGGGAGCTC
LOC_Os04g53070
Target Sequence 
GACTACCACACCGTCATCAAGTGGGAGATTACCCTGGAGGAGAAGAACTTGCTGAGGGTTGGGTTGGAGAGCTTGCCAGA
GAAGAAGATGCATAATGTGCTGCAGATTGTGCGGAAGAGGAACGGCAATCCTGAGCTGGTTGGGGGTGAGATCGAGCTGG
ATATTGATGAGATGGATGTCGAGACACAGTGGGAGCTTGATCGATTCGTCAACAACTTCAAGAAGGCGCTCAACAAGAGT
CGACGGGCTGCCATTGTTAATGGTGAAAATGCCGATGTCATTGATGCTTCCGTGGCTAATGATAGTTATGTGCTGGTGAA
TGGCAGTACCGCTACGATGGTGGACAACGGTGACGTGGCAATGGCAATAGAGAGCAAGGATCCTGACAAGATCACTACAC
AGGCCGAGCAGTTGGATGAGTATGTAGATATCGGGGATGAAATGCCAACAGCAACTCTTTCTCTTAATATACATCGGCCG
ATTCGGGGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis