Browse Element(s) Details


OsAffx.27027.1.S1_at

Description tigr:9633.m02412
TID=OsAffx.27027.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2670010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26660Os.53929.1.S1_at11/115+15404241..15410018EF hand family protein, expressed
LOC_Os05g26670OsAffx.27028.1.S1_at11/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.2.S1_at2/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.3.S1_s_at1/115+15413502..15414040hypothetical protein
LOC_Os05g26680NANA5+15416574..15418571retrotransposon protein, putative, unclassified
LOC_Os05g26690Os.8502.5.S1_x_at7/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.8502.7.S1_x_at6/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.38512.1.S1_x_at4/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.8502.4.S1_at1/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26700OsAffx.27027.1.S1_at10/115+15427258..15427602hypothetical protein
LOC_Os05g26700OsAffx.27027.1.S1_x_at10/115+15427258..15427602hypothetical protein
LOC_Os05g26710OsAffx.16205.1.S1_at2/115+15431644..15433890hypothetical protein
LOC_Os05g26720Os.38512.1.S1_x_at6/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720Os.8502.5.S1_x_at4/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720Os.8502.7.S1_x_at3/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26730NANA5+15435865..15438524retrotransposon protein, putative, LINE subclass
LOC_Os05g26740OsAffx.27523.3.S1_at5/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.2.S1_at5/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.3.S1_x_at4/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.4.S1_at3/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740Os.6502.1.A1_at2/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740Os.6502.1.A1_x_at1/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26750Os.8502.5.S1_x_at5/115+15446283..15446909Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26750Os.38512.1.S1_x_at5/115+15446283..15446909Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26760NANA5+15449151..15450765expressed protein
LOC_Os05g26770Os.8502.5.S1_x_at6/115+15452195..15452772Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26770Os.38512.1.S1_x_at5/115+15452195..15452772Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26770Os.8502.7.S1_x_at4/115+15452195..15452772Prolamin PPROL 14 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27027.1.S1_at--1084--1671NONE
ACCTGGCCAAAGACGCCAACCGGTG
NONE
OsAffx.27027.1.S1_at--537--1391Chr05:15427477..15427500 (24 bp)
AGACGCCAACCGGTGGGCGGCATCA
LOC_Os05g26700
OsAffx.27027.1.S1_at--28--7712Chr05:15427508..15427532 (25 bp)
GGGTCCAAGCCAGACTCGGCATCGA
LOC_Os05g26700
OsAffx.27027.1.S1_at--426--7792Chr05:15427509..15427533 (25 bp)
GGTCCAAGCCAGACTCGGCATCGAT
LOC_Os05g26700
OsAffx.27027.1.S1_at--758--9212Chr05:15427511..15427535 (25 bp)
TCCAAGCCAGACTCGGCATCGATCT
LOC_Os05g26700
OsAffx.27027.1.S1_at--477--1692Chr05:15427515..15427539 (25 bp)
AGCCAGACTCGGCATCGATCTCCAT
LOC_Os05g26700
OsAffx.27027.1.S1_at--822--3412Chr05:15427518..15427542 (25 bp)
CAGACTCGGCATCGATCTCCATCAA
LOC_Os05g26700
OsAffx.27027.1.S1_at--459--9432Chr05:15427523..15427547 (25 bp)
TCGGCATCGATCTCCATCAACAAAA
LOC_Os05g26700
OsAffx.27027.1.S1_at--762--8273Chr05:15427525..15427549 (25 bp)
GGCATCGATCTCCATCAACAAAACA
LOC_Os05g26700
OsAffx.27027.1.S1_at--310--9392Chr05:15427529..15427553 (25 bp)
TCGATCTCCATCAACAAAACAAGCA
LOC_Os05g26700
OsAffx.27027.1.S1_at--759--9232Chr05:15427535..15427559 (25 bp)
TCCATCAACAAAACAAGCACGTCGA
LOC_Os05g26700
Target Sequence 
ACCTGGCCAAAGACGCCAACCGGTGGGCGGCATCAGCTGGCCGGGTCCAAGCCAGACTCGGCATCGATCTCCATCAACAA
AACAAGCACGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis