Browse Element(s) Details


OsAffx.27061.1.S1_at

Description tigr:9633.m02601
TID=OsAffx.27061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to A_IG002N01.28 gene product
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2846011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28404OsAffx.27060.1.S1_at11/115+16557247..16557693hypothetical protein
LOC_Os05g28404OsAffx.2412.1.S1_x_at2/115+16557247..16557693hypothetical protein
LOC_Os05g28404OsAffx.2412.1.S1_at2/115+16557247..16557693hypothetical protein
LOC_Os05g28420Os.26886.1.S1_x_at6/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420Os.26886.3.S1_x_at5/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420OsAffx.16244.1.S1_x_at1/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.6.S1_s_at9/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430OsAffx.16467.1.S1_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.2.S1_s_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28440OsAffx.4457.1.S1_at11/115+16569663..16571723hypothetical protein
LOC_Os05g28450NANA5+16578296..16578727hypothetical protein
LOC_Os05g28460OsAffx.27061.1.S1_at11/115+16581844..16583357expressed protein
LOC_Os05g28470OsAffx.27062.1.S1_at11/115+16584115..16590366hypothetical protein
LOC_Os05g28470Os.22914.1.A1_at10/115+16584115..16590366hypothetical protein
LOC_Os05g28480Os.25494.1.S1_at6/115+16591887..16594358hypothetical protein
LOC_Os05g28490OsAffx.28933.1.S1_x_at5/115+16599513..16600388hypothetical protein
LOC_Os05g28490OsAffx.28933.2.S1_x_at1/115+16599513..16600388hypothetical protein
LOC_Os05g28500Os.14274.1.S1_at9/115+16606063..16610081ubiquitin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27061.1.S1_at--668--5391Chr05:16582709..16582733 (25 bp)
GAAGCTTCCTTATGTGGCAGCGTTT
LOC_Os05g28460
OsAffx.27061.1.S1_at--258--6831Chr05:16582730..16582754 (25 bp)
GTTTACCCAAGTCGACAAGCTTCTT
LOC_Os05g28460
OsAffx.27061.1.S1_at--1054--4871Chr05:16582793..16582817 (25 bp)
GCTATTTAGGCCAACTCGAGTGATT
LOC_Os05g28460
OsAffx.27061.1.S1_at--121--3851Chr05:16582837..16582861 (25 bp)
CTGCAGCTGGGTCCATAGCGCAAAA
LOC_Os05g28460
OsAffx.27061.1.S1_at--813--1951Chr05:16582868..16582892 (25 bp)
ACTGTTGCTTCCTTCTGTTAATTTC
LOC_Os05g28460
OsAffx.27061.1.S1_at--837--191Chr05:16582888..16582912 (25 bp)
ATTTCTACTTGATTGCTCAGCGCTT
LOC_Os05g28460
OsAffx.27061.1.S1_at--1115--2411Chr05:16582939..16582963 (25 bp)
AAAAAATCCTTCCTCATGCATGTCG
LOC_Os05g28460
OsAffx.27061.1.S1_at--827--4991Chr05:16582956..16582980 (25 bp)
GCATGTCGCATCTATGAGTGGGCAA
LOC_Os05g28460
OsAffx.27061.1.S1_at--894--9951Chr05:16583020..16583044 (25 bp)
TACCCTCACGGGTTTGTGTAATGGC
LOC_Os05g28460
OsAffx.27061.1.S1_at--300--6411Chr05:16583218..16583242 (25 bp)
GATCTGATCCTGAAGCAAGTGCACC
LOC_Os05g28460
OsAffx.27061.1.S1_at--1090--7331Chr05:16583236..16583260 (25 bp)
GTGCACCACATTCTATAGAGCCTGA
LOC_Os05g28460
Target Sequence 
GAAGCTTCCTTATGTGGCAGCGTTTACCCAAGTCGACAAGCTTCTTGGAAGTTCTTTAAACGACTGCCCGTTGAGTTCAC
GGCAGCTATTTAGGCCAACTCGAGTGATTGGAGCATGGCAGCTGGAAGCTGCAGCTGGGTCCATAGCGCAAAAGATAGGA
CTGTTGCTTCCTTCTGTTAATTTCTACTTGATTGCTCAGCGCTTCTTGAAGGAGTTATCTCTTCCAATTGAAAAAATCCT
TCCTCATGCATGTCGCATCTATGAGTGGGCAATGCCTGCAGAACTTTGGTTGTCCAGTAATCCTGGCAGGGTACCCTCAC
GGGTTTGTGTAATGGCTATACTAATAGTGGCTCTAAGAGTTCTGTATGGCATCAACGGACAAGGGATATGGGAGAGTATT
GCTCAGACAGAAAATGCAGTTGGATCTGATCCTGAAGCAAGTGCACCACATTCTATAGAGCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis