Browse Element(s) Details


OsAffx.27308.1.S1_at

Description tigr:9633.m04160
TID=OsAffx.27308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4454011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44490OsAffx.22947.1.S1_x_at11/115+25804261..25808835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44490OsAffx.22947.2.S1_x_at4/115+25804261..25808835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44490OsAffx.22947.3.S1_x_at4/115+25804261..25808835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44490OsAffx.22947.5.S1_x_at3/115+25804261..25808835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44500OsAffx.31869.1.S1_at10/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.5.S1_x_at5/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.3.S1_x_at4/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.3.S1_at3/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.3.S1_s_at1/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.4.S1_x_at1/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44510Os.10731.1.A1_a_at5/115+25818783..25820763retrotransposon protein, putative, unclassified
LOC_Os05g44510Os.48015.1.A1_x_at1/115+25818783..25820763retrotransposon protein, putative, unclassified
LOC_Os05g44520Os.46995.1.S1_x_at4/115+25821500..25824320retrotransposon protein, putative, unclassified
LOC_Os05g44520Os.46995.1.S1_at3/115+25821500..25824320retrotransposon protein, putative, unclassified
LOC_Os05g44530OsAffx.15102.1.S1_at10/115+25826086..25826825BTB/POZ domain containing protein
LOC_Os05g44540OsAffx.27308.1.S1_at11/115+25827636..25828684BTB/POZ domain containing protein
LOC_Os05g44550OsAffx.27309.1.S1_at11/115+25830056..25832629hypothetical protein
LOC_Os05g44550OsAffx.14914.1.S1_x_at2/115+25830056..25832629hypothetical protein
LOC_Os05g44550OsAffx.14914.2.S1_x_at1/115+25830056..25832629hypothetical protein
LOC_Os05g44560Os.18241.1.S1_at9/115+25835279..25842870Kinesin motor domain containing protein, expressed
LOC_Os05g44570Os.18241.2.A1_x_at10/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.52244.2.S1_x_at9/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.55846.1.S1_at1/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44580Os.27617.1.S1_at11/115+25852223..25855690expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27308.1.S1_at--1116--9251Chr05:25828176..25828200 (25 bp)
TCCTCCGCGGAGAAACTGGCGCCGA
LOC_Os05g44540
OsAffx.27308.1.S1_at--574--10631Chr05:25828271..25828295 (25 bp)
TTCGACCTAGAGCTCTTCGGCGCAA
LOC_Os05g44540
OsAffx.27308.1.S1_at--695--9571Chr05:25828284..25828308 (25 bp)
TCTTCGGCGCAACGACTGCGAAGGA
LOC_Os05g44540
OsAffx.27308.1.S1_at--332--7211Chr05:25828313..25828337 (25 bp)
GTCGTCGGCCAAAGCACCGGCATCG
LOC_Os05g44540
OsAffx.27308.1.S1_at--1003--1931Chr05:25828458..25828482 (25 bp)
ACGGCGACGACAGGTACGACATTGA
LOC_Os05g44540
OsAffx.27308.1.S1_at--153--9951Chr05:25828472..25828496 (25 bp)
TACGACATTGATGCGTTCACAGTGG
LOC_Os05g44540
OsAffx.27308.1.S1_at--699--8031Chr05:25828516..25828540 (25 bp)
GGAGCAGCATGATTGCCGTGTTCTA
LOC_Os05g44540
OsAffx.27308.1.S1_at--1059--4451Chr05:25828530..25828554 (25 bp)
GCCGTGTTCTAAGGAAACTTGCCTC
LOC_Os05g44540
OsAffx.27308.1.S1_at--1135--2511Chr05:25828545..25828569 (25 bp)
AACTTGCCTCGATTTCTTCATGCGT
LOC_Os05g44540
OsAffx.27308.1.S1_at--665--10531Chr05:25828561..25828585 (25 bp)
TTCATGCGTCGTCCTGGATTTTAGA
LOC_Os05g44540
OsAffx.27308.1.S1_at--610--10451Chr05:25828581..25828605 (25 bp)
TTAGAAGGATGTACTGTTGGGCACC
LOC_Os05g44540
Target Sequence 
TCCTCCGCGGAGAAACTGGCGCCGACGTGGTGTTCGAGGTCGGCGGCGAGAGGTTCGCCGCGCACCGGTGCGTGCTCGAC
GCCCGGTCGTCCGTCTTCGACCTAGAGCTCTTCGGCGCAACGACTGCGAAGGAGGTCGTCGTCGGCCAAAGCACCGGCAT
CGTCCGCGTCGACGGCATGGAGGCGCGGGTGTTCAAGGCGTTGCTCTTCTTCGCGTACACCGACTCGTTGCCGGAGATGA
TGACGACGACGAAGAAGAAGATGGAGGAACAAGCAGCCGGCGACGGCGACGACAGGTACGACATTGATGCGTTCACAGTG
GGGAAGGTCATCGCGCTCGCGGAGCAGCATGATTGCCGTGTTCTAAGGAAACTTGCCTCGATTTCTTCATGCGTCGTCCT
GGATTTTAGAAGGATGTACTGTTGGGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis