Browse Element(s) Details


OsAffx.27309.1.S1_at

Description tigr:9633.m04161
TID=OsAffx.27309.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4455011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44490OsAffx.22947.1.S1_x_at11/115+25804261..25808835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44490OsAffx.22947.2.S1_x_at4/115+25804261..25808835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44490OsAffx.22947.3.S1_x_at4/115+25804261..25808835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44490OsAffx.22947.5.S1_x_at3/115+25804261..25808835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44500OsAffx.31869.1.S1_at10/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.5.S1_x_at5/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.3.S1_x_at4/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.3.S1_at3/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.3.S1_s_at1/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44500OsAffx.31869.4.S1_x_at1/115+25814917..25816032retrotransposon protein, putative, unclassified
LOC_Os05g44510Os.10731.1.A1_a_at5/115+25818783..25820763retrotransposon protein, putative, unclassified
LOC_Os05g44510Os.48015.1.A1_x_at1/115+25818783..25820763retrotransposon protein, putative, unclassified
LOC_Os05g44520Os.46995.1.S1_x_at4/115+25821500..25824320retrotransposon protein, putative, unclassified
LOC_Os05g44520Os.46995.1.S1_at3/115+25821500..25824320retrotransposon protein, putative, unclassified
LOC_Os05g44530OsAffx.15102.1.S1_at10/115+25826086..25826825BTB/POZ domain containing protein
LOC_Os05g44540OsAffx.27308.1.S1_at11/115+25827636..25828684BTB/POZ domain containing protein
LOC_Os05g44550OsAffx.27309.1.S1_at11/115+25830056..25832629hypothetical protein
LOC_Os05g44550OsAffx.14914.1.S1_x_at2/115+25830056..25832629hypothetical protein
LOC_Os05g44550OsAffx.14914.2.S1_x_at1/115+25830056..25832629hypothetical protein
LOC_Os05g44560Os.18241.1.S1_at9/115+25835279..25842870Kinesin motor domain containing protein, expressed
LOC_Os05g44570Os.18241.2.A1_x_at10/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.52244.2.S1_x_at9/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.55846.1.S1_at1/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44580Os.27617.1.S1_at11/115+25852223..25855690expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27309.1.S1_at--599--3771Chr05:25831268..25831292 (25 bp)
CTCTCTTCAGAGTACTTCATTGCCT
LOC_Os05g44550
OsAffx.27309.1.S1_at--410--7011Chr05:25831279..25831303 (25 bp)
GTACTTCATTGCCTTGGGAAACTTT
LOC_Os05g44550
OsAffx.27309.1.S1_at--991--7991Chr05:25831312..25831674 (25 bp)
GGATGTAACGGGACTGAATTCTGAT
LOC_Os05g44550
OsAffx.27309.1.S1_at--645--6251Chr05:25831672..25831696 (25 bp)
GATGGTCATTATGTGAAGCTGTCAT
LOC_Os05g44550
OsAffx.27309.1.S1_at--278--2691Chr05:25831687..25831711 (25 bp)
AAGCTGTCATATGGACCTCGCTGGA
LOC_Os05g44550
OsAffx.27309.1.S1_at--38--8111Chr05:25831699..25831723 (25 bp)
GGACCTCGCTGGATAGTGTACATCA
LOC_Os05g44550
OsAffx.27309.1.S1_at--546--2091Chr05:25831718..25831833 (25 bp)
ACATCATCGGATTAGTTCTGTTGGC
LOC_Os05g44550
OsAffx.27309.1.S1_at--414--8811Chr05:25831834..25831858 (25 bp)
TGTTGCACTGCTGATCATGTACGAT
LOC_Os05g44550
OsAffx.27309.1.S1_at--14--331Chr05:25831859..25831883 (25 bp)
ATACTGAACATGCTGTTCGGTCCCG
LOC_Os05g44550
OsAffx.27309.1.S1_at--213--991Chr05:25832469..25832493 (25 bp)
AGGAGGATCTTCTCCGTCTGAGCTG
LOC_Os05g44550
OsAffx.27309.1.S1_at--967--1611Chr05:25832489..25832513 (25 bp)
AGCTGTCCGCGAGCTCAAGCATGGG
LOC_Os05g44550
Target Sequence 
CTCTCTTCAGAGTACTTCATTGCCTTGGGAAACTTTAACAATCAGGATGTAACGGGACTGAATTCTGATGGTCATTATGT
GAAGCTGTCATATGGACCTCGCTGGATAGTGTACATCATCGGATTAGTTCTGTTGGCTGTTGCACTGCTGATCATGTACG
ATATACTGAACATGCTGTTCGGTCCCGGGCCTGGAGGAGGAGACGCGAGAGCCTCGCTGCTGTCGTCGTCGTCGGCGGCG
GCGGCGAGCAAAGAGGAAGACGACGCGAGCCTGGGGTCGTCGTACGACTCCGTCTCGCACGACGGCGACGGGGAAGACGA
CGACGACGACGTAGAGGAAAGAGGCGGCGGCGGCGGCGGCGGCGAGGGGCGGCACCTATGCGTGGGTGGCAGAGGAGGAC
GGGAGCTGCCCGTTGTGCCGGAGGAAACTGAAGAAAGTGAGGAGGATCTTCTCCGTCTGAGCTGTCCGCGAGCTCAAGCA
TGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis