Browse Element(s) Details


OsAffx.27325.2.S1_x_at

Description tigr:9633.m04266
TID=OsAffx.27325.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4552011/11hypothetical protein
LOC_Os05g455706/11hypothetical protein
LOC_Os05g340701/11expressed protein
LOC_Os09g329101/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45440Os.50268.1.S1_at10/115+26283127..26283809expressed protein
LOC_Os05g45450Os.30063.1.S1_at11/115+26285009..26285752nuclear protein, putative, expressed
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed
LOC_Os05g45470OsAffx.4624.1.S1_at10/115+26291350..26292603hypothetical protein
LOC_Os05g45470OsAffx.25616.5.S1_x_at1/115+26291350..26292603hypothetical protein
LOC_Os05g45480OsAffx.27322.1.S1_s_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45480OsAffx.27322.1.S1_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45490Os.50360.1.S1_at11/115+26296555..26301037expressed protein
LOC_Os05g45500OsAffx.15113.1.S1_at11/115+26301531..26302452expressed protein
LOC_Os05g45510Os.57131.1.S1_at11/115+26302594..26304437expressed protein
LOC_Os05g45520OsAffx.27325.2.S1_x_at11/115+26306006..26308010hypothetical protein
LOC_Os05g45520OsAffx.27325.1.S1_x_at6/115+26306006..26308010hypothetical protein
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein
LOC_Os05g45550NANA5+26315842..26319919retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g45560OsAffx.28338.3.A1_x_at11/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.17065.1.A1_s_at2/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.5300.2.S1_at1/115+26323008..26323946hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_x_at11/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_at9/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.2.S1_x_at6/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53071.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53709.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45580OsAffx.27326.1.S1_at11/115+26330823..26334020expressed protein
LOC_Os05g45580OsAffx.6484.1.A1_at1/115+26330823..26334020expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27325.2.S1_x_at--609--1193Chr05:20046200..20046219 (20 bp)
AGTAGTTGCACCTTTCAAATTCCTC
LOC_Os05g34070
OsAffx.27325.2.S1_x_at--628--3153Chr09:19616877..19617225 (25 bp)
AATTCCTCCACCTCAAGAGCTTGAT
LOC_Os09g32910
OsAffx.27325.2.S1_x_at--995--5911Chr05:26306620..26306644 (25 bp)
GAGCTTGATGATTAATCTTATCGGA
LOC_Os05g45520
OsAffx.27325.2.S1_x_at--633--8431Chr05:26306587..26306611 (25 bp)
GGCCTTTTCCCCAGCTTATGATTAT
LOC_Os05g45520
OsAffx.27325.2.S1_x_at--794--7132Chr05:26325061..26325085 (25 bp)
GTCTTGGAGACTTTCACTTTGATTG
LOC_Os05g45570
OsAffx.27325.2.S1_x_at--434--6892Chr05:26324930..26324954 (25 bp)
GTATCACAGATTCGCATGGAGCATG
LOC_Os05g45570
OsAffx.27325.2.S1_x_at--63--6211Chr05:26306345..26306369 (25 bp)
GAGGCAGATGCCAAGATCCATCCAT
LOC_Os05g45520
OsAffx.27325.2.S1_x_at--417--6971Chr05:26306139..26306163 (25 bp)
GTAGCCCTATGATCATGGAAGCCGA
LOC_Os05g45520
OsAffx.27325.2.S1_x_at--105--7252Chr05:26324606..26324630 (25 bp)
GTCCCCTCCACAGTTAAGTTAGTTG
LOC_Os05g45570
OsAffx.27325.2.S1_x_at--741--1212Chr05:26324590..26324614 (25 bp)
AGTTAGTTGTTCTGAAGCCCTGCGG
LOC_Os05g45570
OsAffx.27325.2.S1_x_at--705--9131Chr05:26306038..26306062 (25 bp)
TGCGGCTGGTGCCATGCTACTAAAG
LOC_Os05g45520
Target Sequence 
AGTAGTTGCACCTTTCAAATTCCTCCACCTCAAGAGCTTGATGATTAATCTTATCGGATTCAATGGGGCCTTTTCCCCAG
CTTATGATTATCTTTCTCTAGCTTATTTTATTGACGTGTCTCCTGTCTTGGAGACTTTCACTTTGATTGTATCACAGATT
CGCATGGAGCATGATGTGATTTCTGAAGATTCCTCACATCTGAGGCAGATGCCAAGATCCATCCATGGCAACATAAAGAA
TGTGAATATCATTGGCTTTTGCTCTGCAAAGAGCATGATCGAGTTAACTTGTCATATTCTTGAGAATGCAACATCACTTG
AATGTCTTACCCTAGACACAATACATGATGATTATGTTCACCCTGATAGATTATCTGTTCACGAAGTTGGTTTCTGTGGT
TGTATAGGTAGCCCTATGATCATGGAAGCCGAAAACGCGCTCTTGGCTATCAAAAGATACATTGTGGGGAAAGTCCCCTC
CACAGTTAAGTTAGTTGTTCTGAAGCCCTGCGGCTGGTGCCATGCTACTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27325.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis