Browse Element(s) Details


OsAffx.27395.1.S1_at

Description tigr:9633.m04773
TID=OsAffx.27395.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5069011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50650Os.36306.2.S1_x_at2/115+28950692..28952249retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed
LOC_Os05g50730OsAffx.4679.1.S1_at11/115+28993775..28995257expressed protein
LOC_Os05g50730Os.54733.1.S1_at10/115+28993775..28995257expressed protein
LOC_Os05g50740OsAffx.22940.2.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.1.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.3.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.3.S1_x_at9/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.18.S1_x_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.2.S1_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.31552.2.S1_at1/115+29000695..29008248Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27395.1.S1_at--673--7511Chr05:28978099..28978123 (25 bp)
GTGGATGCACACACTTATGGTGTTC
LOC_Os05g50690
OsAffx.27395.1.S1_at--123--8611Chr05:28978074..28978098 (25 bp)
TGGTCCGTGCACTCTGCATGGAAGG
LOC_Os05g50690
OsAffx.27395.1.S1_at--1046--1411Chr05:28978008..28978032 (25 bp)
AGAAAGGTGTTGAGCCAAGCAATGT
LOC_Os05g50690
OsAffx.27395.1.S1_at--937--8811Chr05:28977894..28977918 (25 bp)
TGATTCCAAATTCTGCAAGTTACGG
LOC_Os05g50690
OsAffx.27395.1.S1_at--306--4931Chr05:28977870..28977894 (25 bp)
GCTTGACAATCCGTGTTCTTTGCAA
LOC_Os05g50690
OsAffx.27395.1.S1_at--521--2531Chr05:28977578..28977602 (25 bp)
AACTATACGGTCATTTGCTGGGCAC
LOC_Os05g50690
OsAffx.27395.1.S1_at--244--9131Chr05:28977563..28977587 (25 bp)
TGCTGGGCACCATCAGAACTTCATT
LOC_Os05g50690
OsAffx.27395.1.S1_at--1016--2271Chr05:28977502..28977526 (25 bp)
AAATGCACAGAGCACTTTCTGCAAA
LOC_Os05g50690
OsAffx.27395.1.S1_at--883--6531Chr05:28975084..28975108 (25 bp)
GATTCTATCCGTGACAAGGGCTTGG
LOC_Os05g50690
OsAffx.27395.1.S1_at--313--8251Chr05:28975019..28975043 (25 bp)
GGCACCTGAACCTACGGACCAAGTA
LOC_Os05g50690
OsAffx.27395.1.S1_at--891--3911Chr05:28975005..28975029 (25 bp)
CGGACCAAGTAGAAGCTGCAGTGCT
LOC_Os05g50690
Target Sequence 
GTGGATGCACACACTTATGGTGTTCTGGTCCGTGCACTCTGCATGGAAGGGAATATGAAGGATGCTAGAAAGCTGTTTCA
GTCAATGGGAGAGAAAGGTGTTGAGCCAAGCAATGTGATCTATGACATGATGATTTATGGCTATGGGAGAGAAGGGAGCT
CATACAAGGCTCTGAAGTTAATCATGGAGATGAGGCAGAAGGGTTTGATTCCAAATTCTGCAAGTTACGGCTTGACAATC
CGTGTTCTTTGCAAGGATGATAAATGTCAGGAAGCTGAGGCTCTGCTTGATGACATGGAAACTATACGGTCATTTGCTGG
GCACCATCAGAACTTCATTGCAAGCAAAAGTGATAGTCAGCAAAAAGACGAAGATAAATGCACAGAGCACTTTCTGCAAA
ATAAAGTGGGGCAAGCTCTGGAAAGTGATTCTATCCGTGACAAGGGCTTGGAAATTGTTTCTGTTCATGACAAAGGTCTT
GAGGTTAACTCGGCACCTGAACCTACGGACCAAGTAGAAGCTGCAGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis