Browse Element(s) Details


OsAffx.27823.1.S1_at

Description tigr:9640.m02008
TID=OsAffx.27823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2028011/11hypothetical protein
LOC_Os06g255502/11retrotransposon protein, putative, unclassified
LOC_Os09g233101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20260OsAffx.19758.1.S1_at11/1112+11819142..11820473hypothetical protein
LOC_Os12g20270OsAffx.31697.1.S1_at1/1112+11825746..11832383retrotransposon protein, putative, unclassified, expressed
LOC_Os12g20270OsAffx.16111.1.S1_at1/1112+11825746..11832383retrotransposon protein, putative, unclassified, expressed
LOC_Os12g20270OsAffx.22699.1.S1_x_at1/1112+11825746..11832383retrotransposon protein, putative, unclassified, expressed
LOC_Os12g20280OsAffx.27823.1.S1_at11/1112+11841154..11842696hypothetical protein
LOC_Os12g20280OsAffx.27823.2.S1_at6/1112+11841154..11842696hypothetical protein
LOC_Os12g20290OsAffx.29030.1.S1_at1/1112+11847512..11849906retrotransposon protein, putative, unclassified
LOC_Os12g20300OsAffx.21171.3.S1_x_at2/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.4.S1_x_at2/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.5.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.20729.1.S1_x_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.15212.1.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.2022.1.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.5.S1_x_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.4.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.1674.1.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20300OsAffx.21171.2.S1_at1/1112+11850593..11856529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20310Os.11084.1.S1_at11/1112+11860190..11863219expressed protein
LOC_Os12g20310Os.11084.2.S1_at10/1112+11860190..11863219expressed protein
LOC_Os12g20310Os.11084.2.S1_x_at6/1112+11860190..11863219expressed protein
LOC_Os12g20324OsAffx.31820.1.S1_x_at10/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20324Os.4195.1.S1_at9/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20324OsAffx.31820.1.S1_at4/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27823.1.S1_at--486--4092Chr12:11842229..11842253 (25 bp)
CGACGCAATGCTTGTCGCACTTGGG
LOC_Os12g20280
OsAffx.27823.1.S1_at--1162--8051Chr12:11842282..11842306 (25 bp)
GGAGACAAGGCATCAGCGTGAGAAA
LOC_Os12g20280
OsAffx.27823.1.S1_at--1017--7952Chr12:11842332..11842356 (25 bp)
GGATCAGAGAAAGCCGCAGAGGTCA
LOC_Os12g20280
OsAffx.27823.1.S1_at--147--5171Chr12:11842394..11842418 (25 bp)
GCAACCATCTGCCATACCATGAAAG
LOC_Os12g20280
OsAffx.27823.1.S1_at--53--5491Chr12:11842414..11842438 (25 bp)
GAAAGAAATGTTGCCGGGCGTTTCA
LOC_Os12g20280
OsAffx.27823.1.S1_at--925--7551Chr12:11842429..11842453 (25 bp)
GGGCGTTTCAACGTCCGACAATGGC
LOC_Os12g20280
OsAffx.27823.1.S1_at--1108--8432Chr12:11842489..11842513 (25 bp)
GGCCAGATGGCCAGAGTATCAAAGG
LOC_Os12g20280
OsAffx.27823.1.S1_at--605--2771Chr12:11842524..11842548 (25 bp)
AAGAGCTGTGGCGACAAACCTATGT
LOC_Os12g20280
OsAffx.27823.1.S1_at--150--3692Chr12:11842543..11842567 (25 bp)
CTATGTCAACCATGCTAAGCGCGTG
LOC_Os12g20280
OsAffx.27823.1.S1_at--968--9791Chr12:11842558..11842582 (25 bp)
TAAGCGCGTGTGTGCTAAGCGAGCA
LOC_Os12g20280
OsAffx.27823.1.S1_at--473--5193Chr12:11842598..11842622 (25 bp)
GAATTGGCAGCATGTCACGCCCGGA
LOC_Os12g20280
Target Sequence 
CGACGCAATGCTTGTCGCACTTGGGTTGACTTCCCAGTTGCAACTGAAGCCAAGGAGACAAGGCATCAGCGTGAGAAAGT
GTACAATGACATGATGAACAAAAGGATCAGAGAAAGCCGCAGAGGTCAAGCTGAAAGGTTTGAAGATTGGGCTACATTTA
TGGAAGCAACCATCTGCCATACCATGAAAGAAATGTTGCCGGGCGTTTCAACGTCCGACAATGGCATGGGCGGCGCCATT
ATGAGGCGCGCCGAGGCACTGGCCAGATGGCCAGAGTATCAAAGGCTTGTTGATCAAGAGCTGTGGCGACAAACCTATGT
CAACCATGCTAAGCGCGTGTGTGCTAAGCGAGCAGCGCATAAGCAGGGAGAATTGGCAGCATGTCACGCCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis