Browse Element(s) Details


OsAffx.27878.1.S1_at

Description tigr:9634.m02907
TID=OsAffx.27878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3024011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30179Os.26968.1.S1_at9/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179Os.27691.1.S1_x_at5/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179OsAffx.30013.5.S1_x_at3/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179Os.27691.2.S1_x_at2/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179Os.56292.1.S1_x_at2/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179Os.44554.1.A1_at1/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30179Os.56292.1.S1_at1/116+17410748..17427541Cytochrome P450 family protein, expressed
LOC_Os06g30200OsAffx.30217.1.S1_x_at3/116+17428176..17429383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200Os.51185.2.S1_at1/116+17428176..17429383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200Os.26984.1.A1_at1/116+17428176..17429383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30210OsAffx.27877.1.S1_at10/116+17433122..17437215expressed protein
LOC_Os06g30220NANA6+17441125..17442234retrotransposon protein, putative, unclassified
LOC_Os06g30230Os.15352.1.S1_at11/116+17442893..17445408expressed protein
LOC_Os06g30240OsAffx.27878.1.S1_x_at11/116+17451506..17451808hypothetical protein
LOC_Os06g30240OsAffx.27878.1.S1_at11/116+17451506..17451808hypothetical protein
LOC_Os06g30250OsAffx.4970.1.S1_at11/116+17453254..17454482expressed protein
LOC_Os06g30260NANA6+17458707..17462983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30270NANA6+17465821..17468563hypothetical protein
LOC_Os06g30280Os.16112.1.S1_s_at11/116+17469749..17470494expressed protein
LOC_Os06g30280OsAffx.4971.1.S1_at8/116+17469749..17470494expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27878.1.S1_at--1075--2131Chr06:17451751..17451775 (25 bp)
ACAGTTGATGTGATCGAGAGCGAGC
LOC_Os06g30240
OsAffx.27878.1.S1_at--239--791Chr06:17451744..17451768 (25 bp)
ATGTGATCGAGAGCGAGCTCGATGC
LOC_Os06g30240
OsAffx.27878.1.S1_at--714--9391Chr06:17451657..17451681 (25 bp)
TCGATTCCGCCGTGGCTGCATGCGA
LOC_Os06g30240
OsAffx.27878.1.S1_at--417--4251Chr06:17451648..17451672 (25 bp)
CCGTGGCTGCATGCGAGGCGATTTT
LOC_Os06g30240
OsAffx.27878.1.S1_at--746--8331Chr06:17451644..17451668 (25 bp)
GGCTGCATGCGAGGCGATTTTCTAT
LOC_Os06g30240
OsAffx.27878.1.S1_at--235--4991Chr06:17451640..17451664 (25 bp)
GCATGCGAGGCGATTTTCTATGATT
LOC_Os06g30240
OsAffx.27878.1.S1_at--31--4631Chr06:17451636..17451660 (25 bp)
GCGAGGCGATTTTCTATGATTCCGA
LOC_Os06g30240
OsAffx.27878.1.S1_at--946--6211Chr06:17451634..17451658 (25 bp)
GAGGCGATTTTCTATGATTCCGATG
LOC_Os06g30240
OsAffx.27878.1.S1_at--461--8371Chr06:17451632..17451656 (25 bp)
GGCGATTTTCTATGATTCCGATGAG
LOC_Os06g30240
OsAffx.27878.1.S1_at--30--6551Chr06:17451629..17451653 (25 bp)
GATTTTCTATGATTCCGATGAGGTT
LOC_Os06g30240
OsAffx.27878.1.S1_at--1020--3691Chr06:17451623..17451647 (25 bp)
CTATGATTCCGATGAGGTTCATGTC
LOC_Os06g30240
Target Sequence 
ACAGTTGATGTGATCGAGAGCGAGCTCGATGCCGCCGTGGCTGTGGCCGAGATGGAGCTCGATGGTGCCGCAGTTACTGT
CCCCGAGAGCGAGCTCGATTCCGCCGTGGCTGCATGCGAGGCGATTTTCTATGATTCCGATGAGGTTCATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis