Browse Element(s) Details


OsAffx.28219.1.S1_at

Description tigr:9635.m00018
TID=OsAffx.28219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161547 SUPERMAN like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0118011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01140Os.6208.1.S1_at11/117+80699..84181BTB/POZ domain containing protein, expressed
LOC_Os07g01150Os.6797.1.S1_at11/117+86696..89060Sterol desaturase family protein, expressed
LOC_Os07g01160OsAffx.16022.1.S1_at11/117+99251..100003hypothetical protein
LOC_Os07g01170NANA7+103107..103547hypothetical protein
LOC_Os07g01180OsAffx.28219.1.S1_at11/117+107637..108485Zinc finger, C2H2 type family protein
LOC_Os07g01190OsAffx.16024.1.S1_at9/117+111706..112622hypothetical protein
LOC_Os07g01200Os.52976.1.S1_at11/117+113743..116292Tetraacyldisaccharide 4 kinase, putative, expressed
LOC_Os07g01214OsAffx.16025.1.S1_s_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.1.S1_x_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.2.S1_at9/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01230Os.50516.1.S1_at11/117+127012..129670expressed protein
LOC_Os07g01240Os.54098.1.S1_at10/117+132461..141877expressed protein
LOC_Os07g01240OsAffx.17848.5.S1_x_at1/117+132461..141877expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009934biological_processregulation of meristem organization
GO:0010093biological_processspecification of floral organ identity
GO:0016481biological_processnegative regulation of transcription
GO:0045449biological_processregulation of transcription
GO:0048441biological_processpetal development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28219.1.S1_at--61--3711Chr07:108022..108046 (25 bp)
CTAGCTTGCTTCTACAAATCTCCAG
LOC_Os07g01180
OsAffx.28219.1.S1_at--257--591Chr07:108053..108077 (25 bp)
ATCCACAACCGCTGATCATCATCAG
LOC_Os07g01180
OsAffx.28219.1.S1_at--27--8231Chr07:108102..108126 (25 bp)
GGCACTAATTCGTCTCCTAATTCCT
LOC_Os07g01180
OsAffx.28219.1.S1_at--339--9411Chr07:108111..108135 (25 bp)
TCGTCTCCTAATTCCTGCATAGCAA
LOC_Os07g01180
OsAffx.28219.1.S1_at--965--931Chr07:108160..108184 (25 bp)
AGGCAAGATTGTTCATCACCACCAT
LOC_Os07g01180
OsAffx.28219.1.S1_at--348--4791Chr07:108195..108219 (25 bp)
GCTCCTGCGACAACTCATGATCTAG
LOC_Os07g01180
OsAffx.28219.1.S1_at--778--5291Chr07:108286..108310 (25 bp)
GAAGGCGTGTCGATCAGCCGTTGAC
LOC_Os07g01180
OsAffx.28219.1.S1_at--340--5811Chr07:108314..108338 (25 bp)
GACGCCCTCATACTCATCTGAGAGA
LOC_Os07g01180
OsAffx.28219.1.S1_at--1074--1451Chr07:108350..108374 (25 bp)
AGAAGATGATCCTGCAGCGGCTGAT
LOC_Os07g01180
OsAffx.28219.1.S1_at--1067--9771Chr07:108386..108410 (25 bp)
TAAGGTAATCCCAAGCTCCAGTATA
LOC_Os07g01180
OsAffx.28219.1.S1_at--251--10791Chr07:108412..108436 (25 bp)
TTGTTAATCAGCTGGCCATGGACAT
LOC_Os07g01180
Target Sequence 
CTAGCTTGCTTCTACAAATCTCCAGCCCTAAATCCACAACCGCTGATCATCATCAGAATCATCAGCAGCTGCAGCTGCAG
GGCACTAATTCGTCTCCTAATTCCTGCATAGCAACCATCATCAAGGAGAGCAGGAACAAGGCAAGATTGTTCATCACCAC
CATGCCTGCTCCTGCTCCTGCGACAACTCATGATCTAGGACTAGGAGGAGGCAAGGACGACGACGACTCCATCTCCATCT
CCATGGAGGAGATCAGGAGGAAGCGAAGGCGTGTCGATCAGCCGTTGACTCCGACGCCCTCATACTCATCTGAGAGAGAA
CGCCGGCGAGAAGATGATCCTGCAGCGGCTGATGCAAGTAATAATAAGGTAATCCCAAGCTCCAGTATACTTGTTAATCA
GCTGGCCATGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis