Browse Element(s) Details


OsAffx.28238.1.S1_at

Description tigr:9635.m00179
TID=OsAffx.28238.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0272011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02674OsAffx.16053.1.S1_x_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16052.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.28237.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.2.S1_s_at11/117+962718..968699expressed protein
LOC_Os07g02674Os.34986.1.S1_at1/117+962718..968699expressed protein
LOC_Os07g02674Os.26818.2.S1_at1/117+962718..968699expressed protein
LOC_Os07g02690Os.39706.1.S1_at11/117+971167..971827expressed protein
LOC_Os07g02690Os.23172.1.S1_x_at3/117+971167..971827expressed protein
LOC_Os07g02690Os.46022.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.36607.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.40003.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02700OsAffx.5189.1.S1_at4/117+974620..975048hypothetical protein
LOC_Os07g02700Os.23172.1.S1_x_at2/117+974620..975048hypothetical protein
LOC_Os07g02700Os.46022.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02700Os.40003.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02710Os.7343.1.S1_at11/117+976764..980147expressed protein
LOC_Os07g02720OsAffx.28238.1.S1_at11/117+988915..990865hypothetical protein
LOC_Os07g02730OsAffx.8830.1.S1_at11/117+991961..992350hypothetical protein
LOC_Os07g02740OsAffx.28239.1.S1_at11/117+998418..998753hypothetical protein
LOC_Os07g02750Os.26886.3.S1_x_at5/117+1001966..1003454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02760Os.9730.2.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02760Os.9730.1.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02770Os.17878.1.S1_at11/117+1010179..1013284F-box domain containing protein, expressed
LOC_Os07g02780Os.34851.1.S1_at11/117+1013653..1019896protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28238.1.S1_at--964--2711Chr07:990748..990772 (25 bp)
AAGCAATGCTTCTTTCGTCCGGTTT
LOC_Os07g02720
OsAffx.28238.1.S1_at--944--6851Chr07:990727..990751 (25 bp)
GTTTGTCAGTGCAGCGATAACCCAG
LOC_Os07g02720
OsAffx.28238.1.S1_at--606--4631Chr07:990714..990738 (25 bp)
GCGATAACCCAGTCGACGTGCTCTT
LOC_Os07g02720
OsAffx.28238.1.S1_at--453--7151Chr07:990666..990690 (25 bp)
GTCTATGGAAGCCTCAAGCCTGGGA
LOC_Os07g02720
OsAffx.28238.1.S1_at--467--3951Chr07:990616..990640 (25 bp)
CGGCAAGTGCAGTTTGGGTACAGCT
LOC_Os07g02720
OsAffx.28238.1.S1_at--500--51Chr07:990579..990603 (25 bp)
ATTGCATTTCAAGCACTATCCTCCT
LOC_Os07g02720
OsAffx.28238.1.S1_at--599--10651Chr07:990537..990561 (25 bp)
TTCCCTATCCTCGTCGAACAAAGAA
LOC_Os07g02720
OsAffx.28238.1.S1_at--599--4051Chr07:990262..990286 (25 bp)
CGAGGAATCTCACCGGCTTTCTTGC
LOC_Os07g02720
OsAffx.28238.1.S1_at--717--4471Chr07:990192..990216 (25 bp)
GCCTGGTCTATCACGGAAGTTGTTA
LOC_Os07g02720
OsAffx.28238.1.S1_at--747--5291Chr07:990165..990189 (25 bp)
GAAGGCGCTGTCAGAGCACAAGAAG
LOC_Os07g02720
OsAffx.28238.1.S1_at--1114--2471Chr07:990110..990134 (25 bp)
AACACGCGGGAGCACTCCATGGTGC
LOC_Os07g02720
Target Sequence 
AAGCAATGCTTCTTTCGTCCGGTTTGTCAGTGCAGCGATAACCCAGTCGACGTGCTCTTCGGGCAGCGGACCGCCACATC
AGGTCTATGGAAGCCTCAAGCCTGGGAGGTGCAACGCCGTCGGATCTGGCAGCGGCAAGTGCAGTTTGGGTACAGCTGCA
CCCCCTGCAATTGCATTTCAAGCACTATCCTCCTGGCTGCCGTTCCACCTCTTCCCTATCCTCGTCGAACAAAGAATGCG
ATANNNCTCATCTCCATGGATAAGAAGCCTGCGAGGAATCTCACCGGCTTTCTTGCCACCACTGCTGGCACTGTCGTGAA
TAACAACAATAGTGGAAAGTTGCCTGGTCTATCACGGAAGTTGTTACAGAAGGCGCTGTCAGAGCACAAGAAGAACGCAC
TGACAAAGGTCAAGAGCAGTGGCAACACGCGGGAGCACTCCATGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis