Browse Element(s) Details


OsAffx.28427.2.S1_at

Description tigr:9635.m01284
TID=OsAffx.28427.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1303011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12980OsAffx.22699.1.S1_x_at2/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.16451.1.A1_x_at2/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.16451.1.A1_at1/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.8279.1.S1_at1/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12990OsAffx.29755.1.S1_s_at11/117+7450746..7451786hypothetical protein
LOC_Os07g13000Os.10731.1.A1_a_at11/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.1.S1_at10/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000Os.48015.1.A1_at9/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000Os.48015.1.A1_x_at6/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.5.S1_x_at4/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.3.S1_x_at2/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.3.S1_s_at1/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13010OsAffx.29755.3.S1_x_at6/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.4.S1_x_at5/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.5.S1_x_at5/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010Os.44324.1.A1_at4/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.2.S1_x_at4/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13020OsAffx.30941.9.S1_x_at11/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.1.S1_x_at8/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.5.S1_x_at7/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.2.S1_x_at5/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13030OsAffx.28427.2.S1_x_at11/117+7472608..7474077hypothetical protein
LOC_Os07g13030OsAffx.28427.2.S1_at11/117+7472608..7474077hypothetical protein
LOC_Os07g13030OsAffx.28427.1.S1_x_at4/117+7472608..7474077hypothetical protein
LOC_Os07g13040OsAffx.5308.1.S1_at10/117+7474489..7478034hypothetical protein
LOC_Os07g13050OsAffx.28426.1.S1_at7/117+7481244..7482256hypothetical protein
LOC_Os07g13060NANA7+7485464..7488790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13070Os.23706.1.A1_x_at1/117+7491114..7493721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13080Os.14491.2.S1_x_at4/117+7494313..7497107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13080Os.47463.1.S1_x_at4/117+7494313..7497107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13090OsAffx.28427.1.S1_at11/117+7497617..7498855hypothetical protein
LOC_Os07g13090OsAffx.28427.1.S1_x_at11/117+7497617..7498855hypothetical protein
LOC_Os07g13090OsAffx.28427.2.S1_x_at4/117+7497617..7498855hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28427.2.S1_at--947--7351Chr07:7473571..7473595 (25 bp)
GTGTCCGTGCGGCAAGTGGACGACG
LOC_Os07g13030
OsAffx.28427.2.S1_at--886--4571Chr07:7473775..7473799 (25 bp)
GCGCTGCCGGAGGTGAAGGTCAGCA
LOC_Os07g13030
OsAffx.28427.2.S1_at--859--1871Chr07:7473932..7473956 (25 bp)
ACGAGTGTGTGCTCCGGCTGACCAA
LOC_Os07g13030
OsAffx.28427.2.S1_at--837--8331Chr07:7473947..7473971 (25 bp)
GGCTGACCAAGATGCGCGTCGTGTA
LOC_Os07g13030
OsAffx.28427.2.S1_at--704--4751Chr07:7473948..7473972 (25 bp)
GCTGACCAAGATGCGCGTCGTGTAC
LOC_Os07g13030
OsAffx.28427.2.S1_at--727--2791Chr07:7473955..7473979 (25 bp)
AAGATGCGCGTCGTGTACGACGGCG
LOC_Os07g13030
OsAffx.28427.2.S1_at--1029--9671Chr07:7474002..7474026 (25 bp)
TCACCGGCTCTCTGGCTGCTACAAG
LOC_Os07g13030
OsAffx.28427.2.S1_at--548--9511Chr07:7474010..7474034 (25 bp)
TCTCTGGCTGCTACAAGGTCTCAAG
LOC_Os07g13030
OsAffx.28427.2.S1_at--101--9471Chr07:7474012..7474036 (25 bp)
TCTGGCTGCTACAAGGTCTCAAGGT
LOC_Os07g13030
OsAffx.28427.2.S1_at--1082--4751Chr07:7474016..7474040 (25 bp)
GCTGCTACAAGGTCTCAAGGTCTGA
LOC_Os07g13030
OsAffx.28427.2.S1_at--866--3211Chr07:7474023..7474047 (25 bp)
CAAGGTCTCAAGGTCTGAGAAGTAC
LOC_Os07g13030
Target Sequence 
GTGTCCGTGCGGCAAGTGGACGACGAGGGTACCTTCTCCTACAGCGTCGAGAGCGGCAAGTGGACGCGCCGCGGGGACTG
GATGCTGCCGTTCGTTGGCCACGGCCACTACGACGGCGAGCTCGGCTCGTGGGTCGGCCTCCATCATAGCGACGACGACG
GGCGCCTCTCCGCCTGCCGCGTCGTGTCCGCCAGACAGCGCCGCGCGCTGCCGGAGGTGAAGGTCAGCAAGGAGAAGGTG
TTCGTCCAGGTCCCCGGCTGGGCGCGCGTCCAGGCCGAGCTGGTGTACATGGGTGGGCGCAGCGAGTACTGCCTCGTTGA
GTGGCTGGAGCCCGAGGGTAGTAGCGACGAGGAGAAGTGCGACGAGTGTGTGCTCCGGCTGACCAAGATGCGCGTCGTGT
ACGACGGCGACGGCGAGCTCACCGTCGCCGCTCACCGGCTCTCTGGCTGCTACAAGGTCTCAAGGTCTGAGAAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28427.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis