Browse Element(s) Details


OsAffx.28442.1.S1_at

Description tigr:9635.m01435
TID=OsAffx.28442.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0142011/11hypothetical protein
LOC_Os07g1446011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01380Os.27723.1.S1_a_at11/1110+212904..218022hypothetical protein
LOC_Os10g01380Os.38157.1.S1_s_at1/1110+212904..218022hypothetical protein
LOC_Os10g01390OsAffx.30223.1.S1_s_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.1.S1_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.2.S1_at9/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01400OsAffx.30224.1.S1_at11/1110+227709..228730hypothetical protein
LOC_Os10g01410OsAffx.20818.1.S1_at10/1110+233481..235579Calcium binding EGF domain containing protein
LOC_Os10g01420OsAffx.28442.1.S1_at11/1110+236922..237188hypothetical protein
LOC_Os10g01430OsAffx.30225.1.S1_at11/1110+244165..244653hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_x_at10/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_at9/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.4.S1_x_at1/1110+249251..251270hypothetical protein
LOC_Os10g01450OsAffx.442.1.S1_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.442.1.S1_x_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_s_at10/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_x_at4/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.19052.1.S1_at1/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28442.1.S1_at--890--8932Chr07:8245115..8245139 (25 bp)
TGACGGCAATTTTAGTGGGCAACAT
LOC_Os07g14460
OsAffx.28442.1.S1_at--9--652Chr07:8245144..8245168 (25 bp)
ATGCATTGCTAGAAGCTGTATCCGG
LOC_Os07g14460
OsAffx.28442.1.S1_at--260--10032Chr07:8245153..8245177 (25 bp)
TAGAAGCTGTATCCGGGCAGACCCC
LOC_Os07g14460
OsAffx.28442.1.S1_at--12--3352Chr07:8245183..8245207 (25 bp)
CACGTGCGTTTCTCGAGGTATGCAT
LOC_Os07g14460
OsAffx.28442.1.S1_at--803--7852Chr07:8245199..8245223 (25 bp)
GGTATGCATGTTTCTAGCGTTTCCC
LOC_Os07g14460
OsAffx.28442.1.S1_at--443--10632Chr07:8245219..8245243 (25 bp)
TTCCCTCCAACGGTGGCCAGGAAGA
LOC_Os07g14460
OsAffx.28442.1.S1_at--906--8432Chr07:8245233..8245257 (25 bp)
GGCCAGGAAGAAAATTGCATGCGTT
LOC_Os07g14460
OsAffx.28442.1.S1_at--630--612Chr07:8245251..8245275 (25 bp)
ATGCGTTATGCGGATCGATCCTCTA
LOC_Os07g14460
OsAffx.28442.1.S1_at--785--7972Chr07:8245262..8245286 (25 bp)
GGATCGATCCTCTAAATATGCTAAG
LOC_Os07g14460
OsAffx.28442.1.S1_at--1018--10112Chr07:8245278..8245302 (25 bp)
TATGCTAAGGCTTGGAGGTACTCTT
LOC_Os07g14460
OsAffx.28442.1.S1_at--10--8034Chr07:8245291..8245315 (25 bp)
GGAGGTACTCTTTCCATTTCAAAAT
LOC_Os07g14460
Target Sequence 
TGACGGCAATTTTAGTGGGCAACATATTTATGCATTGCTAGAAGCTGTATCCGGGCAGACCCCACCGCCACGTGCGTTTC
TCGAGGTATGCATGTTTCTAGCGTTTCCCTCCAACGGTGGCCAGGAAGAAAATTGCATGCGTTATGCGGATCGATCCTCT
AAATATGCTAAGGCTTGGAGGTACTCTTTCCATTTCAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis