Browse Element(s) Details


OsAffx.28754.1.S1_at

Description gb:NM_185841.1
DB_XREF= gi:34898767
GEN=OJ1131_E05.8
TID=OsAffx.28754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1131_E05.8 (OJ1131_E05.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3497011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34900OsAffx.16561.1.S1_at1/117+20917671..20919038Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34910OsAffx.5530.1.S1_at11/117+20924209..20924748Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os07g34920Os.29830.1.S1_at11/117+20925158..20926689Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34930OsAffx.22554.1.S1_at11/117+20928675..20929421retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g34940Os.19326.1.S1_at11/117+20929967..20931736Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34950Os.36388.1.S1_at11/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950Os.36388.2.S1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_at4/117+20934397..20939958expressed protein
LOC_Os07g34970OsAffx.28754.2.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_x_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34980Os.33894.1.S1_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34980Os.33894.3.S1_x_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34990OsAffx.16563.1.S1_at11/117+20962384..20963037hypothetical protein
LOC_Os07g35004Os.37128.1.S1_at11/117+20968325..20974252Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28754.1.S1_at--40--4831Chr07:20946082..20946437 (25 bp)
GCTCAAGAAAAGTTTCCATAGCCAT
LOC_Os07g34970
OsAffx.28754.1.S1_at--1085--5511Chr07:20946424..20946443 (20 bp)
GAAAAGTTTCCATAGCCATGGTGCT
LOC_Os07g34970
OsAffx.28754.1.S1_at--114--2331Chr07:20946424..20946445 (22 bp)
AAAGTTTCCATAGCCATGGTGCTGG
LOC_Os07g34970
OsAffx.28754.1.S1_at--674--1191Chr07:20946424..20946447 (24 bp)
AGTTTCCATAGCCATGGTGCTGGAG
LOC_Os07g34970
OsAffx.28754.1.S1_at--55--10291Chr07:20946425..20946449 (25 bp)
TTTCCATAGCCATGGTGCTGGAGAC
LOC_Os07g34970
OsAffx.28754.1.S1_at--265--9231Chr07:20946427..20946451 (25 bp)
TCCATAGCCATGGTGCTGGAGACGA
LOC_Os07g34970
OsAffx.28754.1.S1_at--989--9971Chr07:20946431..20946455 (25 bp)
TAGCCATGGTGCTGGAGACGAGCTT
LOC_Os07g34970
OsAffx.28754.1.S1_at--702--4331Chr07:20946434..20946458 (25 bp)
CCATGGTGCTGGAGACGAGCTTGAC
LOC_Os07g34970
OsAffx.28754.1.S1_at--771--811Chr07:20946436..20946460 (25 bp)
ATGGTGCTGGAGACGAGCTTGACAA
LOC_Os07g34970
OsAffx.28754.1.S1_at--183--7311Chr07:20946439..20946463 (25 bp)
GTGCTGGAGACGAGCTTGACAAAAA
LOC_Os07g34970
OsAffx.28754.1.S1_at--883--7991Chr07:20946444..20946468 (25 bp)
GGAGACGAGCTTGACAAAAAGAATA
LOC_Os07g34970
Target Sequence 
GCTCAAGAAAAGTTTCCATAGCCATGGTGCTGGAGACGAGCTTGACAAAAAGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis