Browse Element(s) Details


OsAffx.28884.1.S1_at

Description tigr:9635.m04338
TID=OsAffx.28884.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Skp1 family, dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4327011/11Skp1 family, dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43200OsAffx.21308.1.S1_at4/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200OsAffx.21308.2.S1_x_at2/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200Os.41653.1.S1_x_at1/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43210OsAffx.28883.1.S1_at10/117+25893217..25893711hypothetical protein
LOC_Os07g43220OsAffx.9082.1.S1_at11/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43220OsAffx.21309.1.S1_x_at1/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43230OsAffx.16692.1.S1_at11/117+25900257..25901042Skp1 family, tetramerisation domain containing protein
LOC_Os07g43240Os.9982.1.S1_at9/117+25902941..25903886Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43250Os.9531.1.S1_at11/117+25905959..25906801Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein
LOC_Os07g43310Os.37786.1.S1_at11/117+25928589..25929668Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os07g43316Os.36427.2.S1_x_at11/117+25931353..25934831expressed protein
LOC_Os07g43316Os.36427.2.S1_at11/117+25931353..25934831expressed protein
LOC_Os07g43322Os.32430.1.S1_at11/117+25935223..25938682expressed protein
LOC_Os07g43322OsAffx.16693.1.S1_x_at11/117+25935223..25938682expressed protein
LOC_Os07g43330Os.21364.2.S1_x_at11/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43330Os.21364.1.S1_at8/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43340OsAffx.5622.1.S1_at11/117+25942601..25942986hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28884.1.S1_at--978--1931Chr07:25916922..25916946 (25 bp)
ACGGCAGGGCGAACTCCGGCACCGA
LOC_Os07g43270
OsAffx.28884.1.S1_at--1078--5591Chr07:25917005..25917029 (25 bp)
GACAAGGCGTCCCTCATCGACGTCA
LOC_Os07g43270
OsAffx.28884.1.S1_at--1008--8711Chr07:25917478..25917502 (25 bp)
TGTCTACTCGTTGGCATCTGGTTCG
LOC_Os07g43270
OsAffx.28884.1.S1_at--407--491Chr07:25917493..25917517 (25 bp)
ATCTGGTTCGATGGTGGGATTCCAA
LOC_Os07g43270
OsAffx.28884.1.S1_at--1144--72Chr07:25917511..25917535 (25 bp)
ATTCCAATCCAGGAGATTCGGTTGC
LOC_Os07g43270
OsAffx.28884.1.S1_at--721--2512Chr07:25917544..25917568 (25 bp)
AACATTTCTCAGTGGTCAGTGCTCG
LOC_Os07g43270
OsAffx.28884.1.S1_at--317--9652Chr07:25917552..25917576 (25 bp)
TCAGTGGTCAGTGCTCGATCGATCG
LOC_Os07g43270
OsAffx.28884.1.S1_at--525--5271Chr07:25917579..25917603 (25 bp)
GAATGCGTTTCCTGCTCGTGAGTTT
LOC_Os07g43270
OsAffx.28884.1.S1_at--4--9111Chr07:25917591..25917615 (25 bp)
TGCTCGTGAGTTTGCATTGGGTGCA
LOC_Os07g43270
OsAffx.28884.1.S1_at--917--5172Chr07:25917613..25917637 (25 bp)
GCAAGTTTGGTGTTGCTTGCTTGGA
LOC_Os07g43270
OsAffx.28884.1.S1_at--472--9072Chr07:25917630..25917654 (25 bp)
TGCTTGGATTGTGGTTCGGATTGAA
LOC_Os07g43270
Target Sequence 
ACGGCAGGGCGAACTCCGGCACCGACGAGGAGAGGGCGGCGCTGGGGAGGTTTGACGCGGACTTCGTCGGCGAGCTGGAC
AAGGACAAGGCGTCCCTCATCGACGTCATCATGGCCGCCAACTACCTCAACATCCAGGGGCTCCTCGACATCACCTGCCA
GCGCGTCGCCGACACGATCGGGAGCGCCACCGCCGAGAAGATCCGCGAGGCGTTCGACATCGAGGACGACCTCACCGAGG
CGGAGAAGAAGGAGATCCGCGAGGAGAACGCCTGGGCCTTCGACGGCATCCCCTGTCTACTCGTTGGCATCTGGTTCGAT
GGTGGGATTCCAATCCAGGAGATTCGGTTGCAGATATGCAACATTTCTCAGTGGTCAGTGCTCGATCGATCGGGGAATGC
GTTTCCTGCTCGTGAGTTTGCATTGGGTGCAAGTTTGGTGTTGCTTGCTTGGATTGTGGTTCGGATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis