Browse Element(s) Details


OsAffx.28902.1.S1_s_at

Description tigr:9635.m04484
TID=OsAffx.28902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Thymidylate kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4463011/11Thymidylate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44560OsAffx.5636.1.S1_at11/117+26604045..26609628AMP-binding enzyme family protein
LOC_Os07g44570OsAffx.28901.2.S1_x_at11/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44570OsAffx.28901.1.S1_x_at1/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44580OsAffx.28901.4.S1_x_at11/117+26610959..26611705phototropic-responsive NPH3 family protein, putative
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os07g44630OsAffx.28902.1.S1_s_at11/117+26629637..26631991Thymidylate kinase family protein, expressed
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed
LOC_Os07g44650Os.12246.1.S1_at11/117+26635832..26638211Complex 1 protein containing protein, expressed
LOC_Os07g44660Os.16887.1.S1_at11/117+26638972..26643649xylulose kinase, putative, expressed
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004798molecular_functionthymidylate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28902.1.S1_s_at--716--5551Chr07:26631080..26631104 (25 bp)
GAAAGCTACTTGGTGGAACTACTCT
LOC_Os07g44630
OsAffx.28902.1.S1_s_at--135--8171Chr07:26631066..26631090 (25 bp)
GGAACTACTCTCATTGTTGATCGTT
LOC_Os07g44630
OsAffx.28902.1.S1_s_at--912--3591Chr07:26630907..26631022 (25 bp)
CATTGAGTGGTGCAAGGCTCCTGAA
LOC_Os07g44630
OsAffx.28902.1.S1_s_at--880--2291Chr07:26630883..26630907 (25 bp)
AAATGGACTTATAGCCCCAGATCTT
LOC_Os07g44630
OsAffx.28902.1.S1_s_at--855--5911Chr07:26630266..26630290 (25 bp)
GAGCATTACCATTCACTTCGTGATT
LOC_Os07g44630
OsAffx.28902.1.S1_s_at--418--3451Chr07:26629883..26629907 (25 bp)
CAGTCTGGCCTGGTAGTGTATCGAT
LOC_Os07g44630
OsAffx.28902.1.S1_s_at--602--10071Chr07:26629870..26629894 (25 bp)
TAGTGTATCGATAGCACCATCCCTT
LOC_Os07g44630
OsAffx.28902.1.S1_s_at--539--3611Chr07:26629848..26629872 (25 bp)
CTTGGTGCCAATGCCACATCATTAT
LOC_Os07g44630
OsAffx.28902.1.S1_s_at--444--6231Chr07:26629822..26629846 (25 bp)
GATGGCCTGCTAGAGTTATGCTTTA
LOC_Os07g44630
OsAffx.28902.1.S1_s_at--716--6531Chr07:26629784..26629808 (25 bp)
GATTTCTGTATTCTATGTGCACTTC
LOC_Os07g44630
OsAffx.28902.1.S1_s_at--535--8871Chr07:26629727..26629751 (25 bp)
TGATGTTCTGATAGCCTTTTCGTAA
LOC_Os07g44630
Target Sequence 
GAAAGCTACTTGGTGGAACTACTCTCATTGTTGATCGTTATTCTTATTCTGGAGTGGCATTTTCAGCTGCCAAGGGACTT
GACATTGAGTGGTGCAAGGCTCCTGAAAATGGACTTATAGCCCCAGATCTTGTAGTATATTTGGATGTACAACCAGAGAA
AGCAGCTGAAAGAGGAGGCTATGGGGGTGAGAGATATGAAAAAATTGAATTCCAAAAGAAAGTTGGTGAGCATTACCATT
CACTTCGTGATTCAACATGGAAGGTTGTTGATGGCTCCCTTCCCATGGAAGTTGTGGAAGAACAGCTGAAGGAACTAGCC
ATGAGTTGCATTCTGGAATGCCAAAGCAAGCAACTTGCCAGTCTGGCCTGGTAGTGTATCGATAGCACCATCCCTTGGTG
CCAATGCCACATCATTATCGATGGCCTGCTAGAGTTATGCTTTAAGGAGAGCTTGCTGATTTCTGTATTCTATGTGCACT
TCTATAGAGTGATGTTTTGCGAGAACTTGTTCGCTGATGTTCTGATAGCCTTTTCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28902.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis