Browse Element(s) Details


OsAffx.29567.1.S1_x_at

Description tigr:9636.m03715
TID=OsAffx.29567.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable protein transport protein SEC23 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3699410/11Sec23/Sec24 trunk domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36930NANA8+23229962..23235958retrotransposon protein, putative, unclassified
LOC_Os08g36940Os.31312.5.S1_x_at4/118+23236727..23239982retrotransposon protein, putative, unclassified
LOC_Os08g36940Os.31312.2.S1_x_at4/118+23236727..23239982retrotransposon protein, putative, unclassified
LOC_Os08g36950OsAffx.25952.1.S1_s_at1/118+23243195..23244703expressed protein
LOC_Os08g36960OsAffx.32149.4.S1_at11/118+23248961..23250595F-box domain containing protein, expressed
LOC_Os08g36970Os.57214.1.S1_at11/118+23251865..23252868expressed protein
LOC_Os08g36970Os.49767.1.S1_x_at1/118+23251865..23252868expressed protein
LOC_Os08g36980Os.24652.1.S1_at11/118+23254066..23255878DnaJ domain containing protein, expressed
LOC_Os08g36994Os.9963.1.S1_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.29567.1.S1_x_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994Os.55095.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.32228.1.A1_x_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.4334.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g37010OsAffx.6051.1.S1_at11/118+23270207..232713192-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37020OsAffx.6052.1.S1_at11/118+23271738..23274084expressed protein
LOC_Os08g37030OsAffx.17369.1.S1_at11/118+23275789..232767782-Hydroxyisoflavanone dehydratase, putative
LOC_Os08g37040Os.8320.1.S1_at11/118+23278717..23280057esterase, putative, expressed
LOC_Os08g37050OsAffx.17370.1.S1_at11/118+23284331..232852932-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37060Os.22819.1.S1_at10/118+23285897..232873602-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37070OsAffx.17371.1.S1_at11/118+23292694..23293014hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29567.1.S1_x_at--773--7852Chr08:23259209..23259233 (25 bp)
GGTTTTGGTTTGTTGCCGAAATCAT
LOC_Os08g36994
OsAffx.29567.1.S1_x_at--81--2211Chr08:23259314..23259338 (25 bp)
ACAACAGGTGTTATCGCGGGCTCAA
LOC_Os08g36994
OsAffx.29567.1.S1_x_at--1106--8451Chr08:23259343..23259367 (25 bp)
TGGCCTTTCAGCAGAGAGCATTTCT
LOC_Os08g36994
OsAffx.29567.1.S1_x_at--886--5911Chr08:23259358..23259382 (25 bp)
GAGCATTTCTAGGTTCCTGTTGCCT
LOC_Os08g36994
OsAffx.29567.1.S1_x_at--128--4291Chr08:23259380..23259404 (25 bp)
CCTGCTTCTGAGTGCGAGTTTGTGT
LOC_Os08g36994
OsAffx.29567.1.S1_x_at--446--1471Chr08:23259563..23259587 (25 bp)
AGAAGGATCCTTGGCCAGTTTCAGC
LOC_Os08g36994
OsAffx.29567.1.S1_x_at--501--7411Chr08:23259653..23259677 (25 bp)
GTGTCCCAGGATCAGGTGCTAGAAT
LOC_Os08g36994
OsAffx.29567.1.S1_x_at--861--7871NONE
GGTTCTATCGTATCCAAGTCCTTGT
NONE
OsAffx.29567.1.S1_x_at--114--2851Chr08:23260559..23260583 (25 bp)
AAGTCCTTGTCAGAACCAATTCGTT
LOC_Os08g36994
OsAffx.29567.1.S1_x_at--189--2911Chr08:23260602..23260626 (25 bp)
AAGGTTCTGCTCCACTTTATACCAA
LOC_Os08g36994
OsAffx.29567.1.S1_x_at--1115--10251Chr08:23260691..23260711 (21 bp)
TTTGCATGTGCACTTGACCAGAATT
LOC_Os08g36994
Target Sequence 
GGTTTTGGTTTGTTGCCGAAATCATATGTCTTCAAGGGGACGAAGGAGGTTACAAAGGATCAAATTCTTGAACAAATGTG
CTTCTTTGCAGGGAAAACAAAACCTACAACAGGTGTTATCGCGGGCTCAAGGGATGGCCTTTCAGCAGAGAGCATTTCTA
GGTTCCTGTTGCCTGCTTCTGAGTGCGAGTTTGTGTTGAATTCAATTATAGAAGAACTGCAGAAGGATCCTTGGCCAGTT
TCAGCTGATCAGCGTGCATCAAGATGTACTGGAACTGCATTAAGTGTTGCAGCCAGTCTATTGGGGGTCTGTGTCCCAGG
ATCAGGTGCTAGAATTATGGCATTCATAGGGGGTCCATCTACAGAGGGGCCTGGTTCTATCGTATCCAAGTCCTTGTCAG
AACCAATTCGTTCACATAAAGACCTTGATAAAGGTTCTGCTCCACTTTATACCAAAGCTGTTAAATTCTATGAGGAGATC
TCAAAGCAGCTTGTACATCAAGGCCATGTGCTTGATTTTTTTGCATGTGCACTTGACCAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29567.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis