Browse Element(s) Details


OsAffx.29861.1.S1_at

Description tigr:9637.m01311
TID=OsAffx.29861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1578011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15740NANA9+9618674..9619153hypothetical protein
LOC_Os09g15750Os.12327.1.S1_x_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15750Os.12327.1.S1_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15760Os.10457.1.S1_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15760OsAffx.17722.1.S1_s_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15770Os.8401.1.S1_a_at11/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770Os.8401.1.S1_at8/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed
LOC_Os09g15830OsAffx.29863.1.S1_at10/119+9660772..9661911hypothetical protein
LOC_Os09g15840Os.57109.1.S1_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_x_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_at10/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840OsAffx.17950.1.S1_at8/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.24761.1.A1_at3/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.5.S1_x_at1/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29861.1.S1_at--79--7411Chr09:9640817..9640841 (25 bp)
GTGATCTCGGACAACATCTCGGCGG
LOC_Os09g15780
OsAffx.29861.1.S1_at--300--8851Chr09:9640818..9640842 (25 bp)
TGATCTCGGACAACATCTCGGCGGC
LOC_Os09g15780
OsAffx.29861.1.S1_at--119--8651Chr09:9640872..9640896 (25 bp)
TGGGCTCGCTGATCGGCGCGTGGGT
LOC_Os09g15780
OsAffx.29861.1.S1_at--747--9071Chr09:9641018..9641042 (25 bp)
TGCTTCATCCAGTCGGCGCGGTACT
LOC_Os09g15780
OsAffx.29861.1.S1_at--767--3451Chr09:9641027..9641051 (25 bp)
CAGTCGGCGCGGTACTTCGTGCACG
LOC_Os09g15780
OsAffx.29861.1.S1_at--1049--10611Chr09:9641042..9641066 (25 bp)
TTCGTGCACGCGAGCTTCCTCATGA
LOC_Os09g15780
OsAffx.29861.1.S1_at--141--7351Chr09:9641045..9641069 (25 bp)
GTGCACGCGAGCTTCCTCATGAGCG
LOC_Os09g15780
OsAffx.29861.1.S1_at--861--4611Chr09:9641051..9641075 (25 bp)
GCGAGCTTCCTCATGAGCGCGCTCG
LOC_Os09g15780
OsAffx.29861.1.S1_at--150--4371Chr09:9641169..9641193 (25 bp)
CCACGGCGCTGCTCATGTGGGTGTT
LOC_Os09g15780
OsAffx.29861.1.S1_at--839--9071Chr09:9641178..9641202 (25 bp)
TGCTCATGTGGGTGTTCGGCCCCGT
LOC_Os09g15780
OsAffx.29861.1.S1_at--296--4531Chr09:9641333..9641357 (25 bp)
GCCGCGAGATCAGCCGTGGCAAGGG
LOC_Os09g15780
Target Sequence 
GTGATCTCGGACAACATCTCGGCGGCGACGACGCTGGCGTCGCTGTGCATCGCGCTGGGCTCGCTGATCGGCGCGTGGGT
GAGCAGCTCGCCGGCGCCGGGCGCCGCGGGCGTCGTCGTCCTCGGCTACGGCGACGGCAGCCACGCGACGGCGACGGTGA
AGTGCGTCGCGCTCCTCGCCTGCTTCCTCGCCTCCTTCACCTGCTTCATCCAGTCGGCGCGGTACTTCGTGCACGCGAGC
TTCCTCATGAGCGCGCTCGCCGGCGACGCGGCGCCGCCGGTGGGCGACGCGCAGCGCGCCGTGGTCCGCGGCGGCAACTT
CTGGGCGGCGGGGCTCCGCGCGCTCTACCTCGCCACGGCGCTGCTCATGTGGGTGTTCGGCCCCGTCCCGATGCTCGCCT
GCTCCGTGCTCACCGTCGCCGCGCTCCACCGCCTNGACGCCAACTCCATGCCGCTGCACCACCACCGGTTCACGGCGAGG
AGCACGGACGCGTCGCCGGCGACGGCGCCGGTGGCCGCCGCGAGATCAGCCGTGGCAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis