Browse Element(s) Details


OsAffx.29862.1.S1_at

Description tigr:9637.m01313
TID=OsAffx.29862.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1580011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15750Os.12327.1.S1_x_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15750Os.12327.1.S1_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15760Os.10457.1.S1_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15760OsAffx.17722.1.S1_s_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15770Os.8401.1.S1_a_at11/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770Os.8401.1.S1_at8/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed
LOC_Os09g15830OsAffx.29863.1.S1_at10/119+9660772..9661911hypothetical protein
LOC_Os09g15840Os.57109.1.S1_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_x_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_at10/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840OsAffx.17950.1.S1_at8/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.24761.1.A1_at3/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.5.S1_x_at1/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29862.1.S1_at--465--71Chr09:9647289..9647313 (25 bp)
ATTGCTCGGTGCAAGTCGGATCCAC
LOC_Os09g15800
OsAffx.29862.1.S1_at--1055--9111Chr09:9647205..9647229 (25 bp)
TGCTGGCATGTATGTCTTGCTTTCA
LOC_Os09g15800
OsAffx.29862.1.S1_at--166--351Chr09:9647071..9647095 (25 bp)
ATAAAGTCCACACTTTCTCAGCTGG
LOC_Os09g15800
OsAffx.29862.1.S1_at--526--3751Chr09:9647055..9647079 (25 bp)
CTCAGCTGGTGATTGTGTGCATCCT
LOC_Os09g15800
OsAffx.29862.1.S1_at--439--5951Chr09:9646919..9646943 (25 bp)
GAGCACATGCTCAAGTACCACAGCG
LOC_Os09g15800
OsAffx.29862.1.S1_at--537--5211Chr09:9646873..9646897 (25 bp)
GAATTTTAAATATTCCTCCTGGGAG
LOC_Os09g15800
OsAffx.29862.1.S1_at--712--3991Chr09:9646856..9646880 (25 bp)
CCTGGGAGGCCTATCCGAGTTATAA
LOC_Os09g15800
OsAffx.29862.1.S1_at--968--8051Chr09:9646814..9646838 (25 bp)
GGAGACTGTCACAATGCTTTCAAGT
LOC_Os09g15800
OsAffx.29862.1.S1_at--1027--231Chr09:9646789..9646813 (25 bp)
ATATCTCCGCAATTGAGGGCAGGCT
LOC_Os09g15800
OsAffx.29862.1.S1_at--94--911Chr09:9646769..9646793 (25 bp)
AGGCTGATCCTATTGCGTGATTCTA
LOC_Os09g15800
OsAffx.29862.1.S1_at--118--6571Chr09:9646751..9646775 (25 bp)
GATTCTAACCGATTTCACCACTTTA
LOC_Os09g15800
Target Sequence 
ATTGCTCGGTGCAAGTCGGATCCACCGCAATCCTGAACTTGGCAGGAGTGCAGCTGAGAAAATATTTGAGTTGGAGCCTG
AAAATGCTGGCATGTATGTCTTGCTTTCAAATATATATGCATCTTCTGGGAAATGGCGAGATGCGAGGAAAATGAGAGTT
ATGATGGAAGAGCGGGGTGTGAAGAAGGTGCCTGGATTCAGTTGGATTGAAGTACAGAATAAAGTCCACACTTTCTCAGC
TGGTGATTGTGTGCATCCTGAGAAAGAAAAGATATATGCTTTCTTAGAAGACCTTGACATGAGAATGAAGAAAGCTGGCT
ATGTATCAGCTACAGATATGGTTTTGCATGATGTGGAGGAGGAAGAGAAGGAGCACATGCTCAAGTACCACAGCGAAAAG
CTTGCTGTTGCTTATGGAATTTTAAATATTCCTCCTGGGAGGCCTATCCGAGTTATAAAAAACCTCAGGGTATGTGGAGA
CTGTCACAATGCTTTCAAGTATATCTCCGCAATTGAGGGCAGGCTGATCCTATTGCGTGATTCTAACCGATTTCACCACT
TTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis