Browse Element(s) Details


OsAffx.30132.1.S1_x_at

Description tigr:9637.m02925
TID=OsAffx.30132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3394011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein
LOC_Os09g33930Os.10844.1.S1_at11/119+20023466..20026650Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein
LOC_Os09g33950OsAffx.6477.1.S1_s_at11/119+20039126..20039900expressed protein
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein
LOC_Os09g33970Os.8804.1.S1_at11/119+20053363..20057190expressed protein
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30132.1.S1_x_at--917--6531Chr09:20035381..20035405 (25 bp)
GATTTTCATCAAGGTGGCGGTGCTA
LOC_Os09g33940
OsAffx.30132.1.S1_x_at--182--6851Chr09:20035425..20035449 (25 bp)
GTTTGCTTCCTTCAAGTCATATCTG
LOC_Os09g33940
OsAffx.30132.1.S1_x_at--819--6291Chr09:20035459..20035589 (25 bp)
GATGATCTTCATCGCAAGCAACGCA
LOC_Os09g33940
OsAffx.30132.1.S1_x_at--1118--831Chr09:20035619..20035643 (25 bp)
ATGGACATCCAGTCAGTCTTTGCTG
LOC_Os09g33940
OsAffx.30132.1.S1_x_at--785--3371Chr09:20036010..20036034 (25 bp)
CACCAGAAGCGATGTCACTACTAGA
LOC_Os09g33940
OsAffx.30132.1.S1_x_at--756--9771Chr09:20036077..20036101 (25 bp)
TAATGGTTCATCCTATTCTGGAGAT
LOC_Os09g33940
OsAffx.30132.1.S1_x_at--661--5651Chr09:20036137..20036161 (25 bp)
GACAGTGGAAAGACTCCTCCGCAAT
LOC_Os09g33940
OsAffx.30132.1.S1_x_at--54--351Chr09:20036160..20036242 (25 bp)
ATAAATGCCAGTTGATGCAGGAGTT
LOC_Os09g33940
OsAffx.30132.1.S1_x_at--890--10211Chr09:20036738..20036762 (25 bp)
TATTGCATGCCTGGAGTTCAGCCAA
LOC_Os09g33940
OsAffx.30132.1.S1_x_at--630--2311Chr09:20036780..20036804 (25 bp)
AAAGACGAACCCTCGTGATGCACGG
LOC_Os09g33940
OsAffx.30132.1.S1_x_at--753--4371Chr09:20036818..20036842 (25 bp)
CCAACCTGCTGGCTGAGCTTCTTAA
LOC_Os09g33940
Target Sequence 
GATTTTCATCAAGGTGGCGGTGCTAAGGACAACAAGGATCTGAAGTTTGCTTCCTTCAAGTCATATCTGAAAAAACGGGA
TGATCTTCATCGCAAGCAACGCATGATTGAAGATGAAACTGTTCAATTTGATATGGACATCCAGTCAGTCTTTGCTGGAG
GGGAGTGGACACCAGAAGCGATGTCACTACTAGAAAAATATGGAATTCTTGTCGATAGCTTAGATATGGTGGAAGTTAAT
GGTTCATCCTATTCTGGAGATGGATATGAAACCTTAACCATTGAGAGGAAGAAATTGACAGTGGAAAGACTCCTCCGCAA
TAAATGCCAGTTGATGCAGGAGTTGGATGAGGTCTGCCGTGAGAATAATTGGATTCTTCCGAGATATAAAGTTATGCCAT
CACTAACAGATGGCATGTACGTGGCCAATGTAGATATTGCATGCCTGGAGTTCAGCCAAATGACATTTGGCGATCCAAAG
ACGAACCCTCGTGATGCACGGGAGTCTGCAGCTGCCAACCTGCTGGCTGAGCTTCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30132.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis