Browse Element(s) Details


OsAffx.30225.1.S1_at

Description gb:NM_194501.1
DB_XREF= gi:37530361
TID=OsAffx.30225.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0071K19.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0143011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01390OsAffx.30223.1.S1_s_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.1.S1_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.2.S1_at9/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01400OsAffx.30224.1.S1_at11/1110+227709..228730hypothetical protein
LOC_Os10g01410OsAffx.20818.1.S1_at10/1110+233481..235579Calcium binding EGF domain containing protein
LOC_Os10g01420OsAffx.28442.1.S1_at11/1110+236922..237188hypothetical protein
LOC_Os10g01430OsAffx.30225.1.S1_at11/1110+244165..244653hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_x_at10/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_at9/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.4.S1_x_at1/1110+249251..251270hypothetical protein
LOC_Os10g01450OsAffx.442.1.S1_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.442.1.S1_x_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_s_at10/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_x_at4/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.19052.1.S1_at1/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01460OsAffx.30227.1.S1_at11/1110+266298..266711hypothetical protein
LOC_Os10g01470Os.27388.1.S1_s_at11/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01470Os.49759.1.S1_x_at1/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30225.1.S1_at--277--1072Chr10:244241..244265 (25 bp)
AGGGAAGCTTGCTGGGTTCGTTGCC
LOC_Os10g01430
OsAffx.30225.1.S1_at--906--2752Chr10:244303..244327 (25 bp)
AAGACGAGGATACGCGTCTTCTTCA
LOC_Os10g01430
OsAffx.30225.1.S1_at--902--8412Chr10:244348..244372 (25 bp)
GGCCTCGCCGACATGATGGTGTCGC
LOC_Os10g01430
OsAffx.30225.1.S1_at--352--2112Chr10:244358..244382 (25 bp)
ACATGATGGTGTCGCTGCTCGAATC
LOC_Os10g01430
OsAffx.30225.1.S1_at--870--8712Chr10:244367..244391 (25 bp)
TGTCGCTGCTCGAATCTCCCTACAG
LOC_Os10g01430
OsAffx.30225.1.S1_at--760--8172Chr10:244410..244434 (25 bp)
GGAACGATCGGTTGTGATCCCGCGC
LOC_Os10g01430
OsAffx.30225.1.S1_at--1160--4651Chr10:244452..244476 (25 bp)
GCGGGTGAAGCTGCGGTGGTTCTGC
LOC_Os10g01430
OsAffx.30225.1.S1_at--661--8112Chr10:244548..244572 (25 bp)
GGACATGGTAGCAGGATTTGGTATA
LOC_Os10g01430
OsAffx.30225.1.S1_at--530--7612Chr10:244577..244601 (25 bp)
GGGACGTCGACAACATGTGTGGACC
LOC_Os10g01430
OsAffx.30225.1.S1_at--21--2512Chr10:244588..244612 (25 bp)
AACATGTGTGGACCGGGTAGCTCTC
LOC_Os10g01430
OsAffx.30225.1.S1_at--404--8672Chr10:244592..244616 (25 bp)
TGTGTGGACCGGGTAGCTCTCCTCT
LOC_Os10g01430
Target Sequence 
AGGGAAGCTTGCTGGGTTCGTTGCCGGACGGGCGGCTGTGCTGGGCGGAGGTGTCGTGGGACAAGACGAGGATACGCGTC
TTCTTCACCCACCACCACCACTACCACGGCCTCGCCGACATGATGGTGTCGCTGCTCGAATCTCCCTACAGCGGCCAGCG
CTGGCAGCGGGAACGATCGGTTGTGATCCCGCGCTCTTCCTGCCACTGCCAGCGGGTGAAGCTGCGGTGGTTCTGCGAGA
AGAGCGGCCTCATCCTCTTCACCGCCGACTACCGCTGTTACACCCTCAACCTCGAAACCATGGAGGTGGACATGGTAGCA
GGATTTGGTATACAAGGGGACGTCGACAACATGTGTGGACCGGGTAGCTCTCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis