Browse Element(s) Details


OsAffx.30226.1.S1_at

Description tigr:9638.m00047
TID=OsAffx.30226.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g014409/11hypothetical protein
LOC_Os12g017804/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g233202/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g083702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g407902/11hypothetical protein
LOC_Os02g123902/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g733802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g108902/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g464502/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g184202/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g357401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g107101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g303601/11hypothetical protein
LOC_Os08g086401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g055501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g137901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g144101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g187601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g111501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g150301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g268201/11hypothetical protein
LOC_Os03g279101/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01390OsAffx.30223.1.S1_s_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.1.S1_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.2.S1_at9/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01400OsAffx.30224.1.S1_at11/1110+227709..228730hypothetical protein
LOC_Os10g01410OsAffx.20818.1.S1_at10/1110+233481..235579Calcium binding EGF domain containing protein
LOC_Os10g01420OsAffx.28442.1.S1_at11/1110+236922..237188hypothetical protein
LOC_Os10g01430OsAffx.30225.1.S1_at11/1110+244165..244653hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_x_at10/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_at9/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.4.S1_x_at1/1110+249251..251270hypothetical protein
LOC_Os10g01450OsAffx.442.1.S1_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.442.1.S1_x_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_s_at10/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_x_at4/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.19052.1.S1_at1/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01460OsAffx.30227.1.S1_at11/1110+266298..266711hypothetical protein
LOC_Os10g01470Os.27388.1.S1_s_at11/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01470Os.49759.1.S1_x_at1/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30226.1.S1_at--595--12718Chr10:249538..249606 (25 bp)
AGATCTAACCAGAGAGTGGTTCTGT
LOC_Os10g01440
OsAffx.30226.1.S1_at--110--36913Chr10:249647..249780 (25 bp)
CTAGTGTCGATGGAGCGGAAGTTTA
LOC_Os10g01440
OsAffx.30226.1.S1_at--912--6092Chr10:249913..249937 (25 bp)
GAGTCAGAGTAGAGGCTGTTCTAAA
LOC_Os10g01440
OsAffx.30226.1.S1_at--845--9632Chr10:249916..249940 (25 bp)
TCAGAGTAGAGGCTGTTCTAAATCC
LOC_Os10g01440
OsAffx.30226.1.S1_at--542--8151NONE
GGAAATCTGATGTATTGCCAAGCCA
NONE
OsAffx.30226.1.S1_at--1030--471NONE
ATCTGATGTATTGCCAAGCCAGCCT
NONE
OsAffx.30226.1.S1_at--647--62723Chr11:16225445..16225466 (22 bp)
GATGTATTGCCAAGCCAGCCTCTGA
NONE
OsAffx.30226.1.S1_at--988--102122Chr11:16225446..16225470 (25 bp)
TATTGCCAAGCCAGCCTCTGACCAT
NONE
OsAffx.30226.1.S1_at--827--44520Chr10:251180..251204 (25 bp)
GCCTCTGACCATCCGGAACGGGCAT
LOC_Os10g01440
OsAffx.30226.1.S1_at--854--8176Chr10:251194..251218 (25 bp)
GGAACGGGCATCCGCCATTCACCTG
LOC_Os10g01440
OsAffx.30226.1.S1_at--905--96717Chr11:16225492..16225515 (24 bp)
TCACCTGGCCATCCGAACCGGGCAT
NONE
Target Sequence 
AGATCTAACCAGAGAGTGGTTCTGTGTTGAACCATATATCGGTCTTCAAGGAGATCATTGCCGACCTAGTGTCGATGGAG
CGGAAGTTTATGAGGCGCTCCAAAACAGGGAGAAGATGAAAGGTATGGTTCAGTCTGATGTGTCGTCCTCTAAGGGCGAA
GCATTGCAGGTCAGAGGCAGATCTGAGCAGAGAACCTACAACGACAGCAATGACCGTGACAAGAGTCAGAGTAGAGGCTG
TTCTAAATCCAGAGGTAAAAAGTTCTGTAAGTATTGCAAAAAGAAAAATCACTTCATTGAAGAATGTTGGAAGCTGCAGA
ATAAGGAGAAAAGGAAATCTGATGTATTGCCAAGCCAGCCTCTGACCATCCGGAACGGGCATCCGCCATTCACCTGGCCA
TCCGAACCGGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis