Browse Element(s) Details


OsAffx.30226.1.S1_x_at

Description tigr:9638.m00047
TID=OsAffx.30226.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0144010/11hypothetical protein
LOC_Os12g017806/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g464505/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g233205/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g111503/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g144103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g733803/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g123903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g108903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g083703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g184202/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g107102/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g086402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g357402/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g137902/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g279102/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g119402/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g055502/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g150302/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g407901/11hypothetical protein
LOC_Os08g303601/11hypothetical protein
LOC_Os07g187601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g268201/11hypothetical protein
LOC_Os06g211701/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g093801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01390OsAffx.30223.1.S1_s_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.1.S1_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.2.S1_at9/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01400OsAffx.30224.1.S1_at11/1110+227709..228730hypothetical protein
LOC_Os10g01410OsAffx.20818.1.S1_at10/1110+233481..235579Calcium binding EGF domain containing protein
LOC_Os10g01420OsAffx.28442.1.S1_at11/1110+236922..237188hypothetical protein
LOC_Os10g01430OsAffx.30225.1.S1_at11/1110+244165..244653hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_x_at10/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_at9/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.4.S1_x_at1/1110+249251..251270hypothetical protein
LOC_Os10g01450OsAffx.442.1.S1_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.442.1.S1_x_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_s_at10/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_x_at4/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.19052.1.S1_at1/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01460OsAffx.30227.1.S1_at11/1110+266298..266711hypothetical protein
LOC_Os10g01470Os.27388.1.S1_s_at11/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01470Os.49759.1.S1_x_at1/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30226.1.S1_x_at--785--1275Chr10:249418..249442 (25 bp)
AGATCGTAAGGCTCTGTCGCTAATC
LOC_Os10g01440
OsAffx.30226.1.S1_x_at--596--12718Chr10:249538..249606 (25 bp)
AGATCTAACCAGAGAGTGGTTCTGT
LOC_Os10g01440
OsAffx.30226.1.S1_x_at--111--36913Chr10:249647..249780 (25 bp)
CTAGTGTCGATGGAGCGGAAGTTTA
LOC_Os10g01440
OsAffx.30226.1.S1_x_at--903--13512Chr10:249879..249903 (25 bp)
AGAGAACCTACAACGACAGCAATGA
LOC_Os10g01440
OsAffx.30226.1.S1_x_at--276--4111Chr10:249892..249916 (25 bp)
CGACAGCAATGACCGTGACAAGAGT
LOC_Os10g01440
OsAffx.30226.1.S1_x_at--913--6092Chr10:249913..249937 (25 bp)
GAGTCAGAGTAGAGGCTGTTCTAAA
LOC_Os10g01440
OsAffx.30226.1.S1_x_at--517--6212Chr10:249924..249948 (25 bp)
GAGGCTGTTCTAAATCCAGAGGTAA
LOC_Os10g01440
OsAffx.30226.1.S1_x_at--687--53713Chr10:249989..250013 (25 bp)
GAAGAATGTTGGAAGCTGCAGAATA
LOC_Os10g01440
OsAffx.30226.1.S1_x_at--541--8151NONE
GGAAATCTGATGTATTGCCAAGCCA
NONE
OsAffx.30226.1.S1_x_at--648--62723Chr11:16225445..16225466 (22 bp)
GATGTATTGCCAAGCCAGCCTCTGA
NONE
OsAffx.30226.1.S1_x_at--1082--16519Chr10:251179..251203 (25 bp)
AGCCTCTGACCATCCGGAACGGGCA
LOC_Os10g01440
Target Sequence 
AGATCGTAAGGCTCTGTCGCTAATCCAACTTCATCTATCTAATGATATTTTGCAAGAAGTGTTGCAGGAAAAGACTGCTG
CAGAACTTTGGCTCAAACTGGAATCGATCTGCATGTCTAAAGATCTAACCAGAGAGTGGTTCTGTGTTGAACCATATATC
GGTCTTCAAGGAGATCATTGCCGACCTAGTGTCGATGGAGCGGAAGTTTATGAGGCGCTCCAAAACAGGGAGAAGATGAA
AGGTATGGTTCAGTCTGATGTGTCGTCCTCTAAGGGCGAAGCATTGCAGGTCAGAGGCAGATCTGAGCAGAGAACCTACA
ACGACAGCAATGACCGTGACAAGAGTCAGAGTAGAGGCTGTTCTAAATCCAGAGGTAAAAAGTTCTGTAAGTATTGCAAA
AAGAAAAATCACTTCATTGAAGAATGTTGGAAGCTGCAGAATAAGGAGAAAAGGAAATCTGATGTATTGCCAAGCCAGCC
TCTGACCATCCGGAACGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30226.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis