Browse Element(s) Details


OsAffx.30264.1.S1_at

Description tigr:9638.m00293
TID=OsAffx.30264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0385011/11F-box domain containing protein, expressed
LOC_Os10g037802/11F-box domain containing protein, expressed
LOC_Os11g257301/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03809NANA10+1706335..1706961NA
LOC_Os10g03820OsAffx.18116.1.S1_at11/1110+1710568..1711389hypothetical protein
LOC_Os10g03830Os.27532.1.S1_a_at11/1110+1713491..1724273expressed protein
LOC_Os10g03840OsAffx.30263.1.S1_at11/1110+1725136..1726654hypothetical protein
LOC_Os10g03850OsAffx.30264.1.S1_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.27520.4.S1_a_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.10255.1.S1_s_at7/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.38269.1.S1_x_at2/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.8362.2.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.51910.1.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03860Os.46707.1.A1_at2/1110+1736069..1736981expressed protein
LOC_Os10g03860Os.55601.1.S1_at1/1110+1736069..1736981expressed protein
LOC_Os10g03870Os.46806.1.S1_at10/1110+1739610..1742217F-box domain containing protein, expressed
LOC_Os10g03880OsAffx.30265.1.S1_at11/1110+1750494..1751369CAF1 family ribonuclease containing protein
LOC_Os10g03890OsAffx.4997.1.S1_at11/1110+1752563..1753140hypothetical protein
LOC_Os10g03900Os.46496.2.A1_at11/1110+1755159..1757329hypothetical protein
LOC_Os10g03900Os.8362.2.S1_x_at1/1110+1755159..1757329hypothetical protein
LOC_Os10g03910Os.46426.1.S1_at11/1110+1758934..1761825F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30264.1.S1_at--768--131Chr10:1729690..1729714 (25 bp)
ATTACCTGTACCTGCAAAACTTATG
LOC_Os10g03850
OsAffx.30264.1.S1_at--1070--30111Chr07:7747120..7747140 (21 bp)
AATCCTAACCATTTATTCTCCCTCT
NONE
OsAffx.30264.1.S1_at--500--6651Chr10:1729468..1729492 (25 bp)
GTTGATACGATGACCACTGATGTTA
LOC_Os10g03850
OsAffx.30264.1.S1_at--613--9011Chr10:1729431..1729455 (25 bp)
TGCAATATAGTTCATCCACTCCAGC
LOC_Os10g03850
OsAffx.30264.1.S1_at--1099--3311Chr10:1729415..1729439 (25 bp)
CACTCCAGCCATTTTTTGTACACAA
LOC_Os10g03850
OsAffx.30264.1.S1_at--618--3032Chr10:1729387..1729411 (25 bp)
AATCCGTTGAACACTTGTCCTGCTG
LOC_Os10g03850
OsAffx.30264.1.S1_at--1161--2553Chr10:1729331..1729355 (25 bp)
AACTGGATCATTTCTCATGTGAGGA
LOC_Os10g03850
OsAffx.30264.1.S1_at--844--5271Chr10:1729303..1729327 (25 bp)
GAATGTTCTAGTCTGGATGCAATAT
LOC_Os10g03850
OsAffx.30264.1.S1_at--45--6331Chr10:1729288..1729312 (25 bp)
GATGCAATATCAGGGCTGCCAACCA
LOC_Os10g03850
OsAffx.30264.1.S1_at--893--9191Chr10:1729272..1729296 (25 bp)
TGCCAACCAAATGTGCATCTTGTTT
LOC_Os10g03850
OsAffx.30264.1.S1_at--903--2071Chr10:1729222..1729246 (25 bp)
ACATCAGTTCACATCTTACCTTACT
LOC_Os10g03850
Target Sequence 
ATTACCTGTACCTGCAAAACTTATGGGCATTGTTTGGATAATGGGATAGGGAAATGATTTCCCAACTATCAAAAGGTATC
TTTAAATCCTAACCATTTATTCTCCCTCTTCCATTTAATCCTAACCCTTCATTCATTTCCTAATCCCAATCCCACCCTTC
ATTTCCCATTATCCAAACACACCCATGATTCAAGTGATCATTTTGTCGTGAAATCATGATGTGTTGATACGATGACCACT
GATGTTATCAACCACTCAATGCAATATAGTTCATCCACTCCAGCCATTTTTTGTACACAAATCAATCCGTTGAACACTTG
TCCTGCTGTTTCTTTGTTGGTAGTTTTATCTCAAAATGAAACTGGATCATTTCTCATGTGAGGACTAGAATGTTCTAGTC
TGGATGCAATATCAGGGCTGCCAACCAAATGTGCATCTTGTTTGACATCTGACTGATTATTTTAGTTGACATCAGTTCAC
ATCTTACCTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis