Browse Element(s) Details


OsAffx.31685.1.S1_at

Description tigr:9640.m01003
TID=OsAffx.31685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ZF-HD protein dimerisation region, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1063011/11ZF-HD protein dimerisation region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10604OsAffx.32330.1.S1_x_at11/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32329.1.S1_x_at9/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604Os.51504.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32331.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32332.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32334.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.23830.2.S1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32333.1.A1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10610Os.26688.1.S2_s_at11/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.32337.1.S1_x_at3/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610Os.38764.1.S1_x_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.20877.1.S1_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10620NANA12+5661215..5661832hypothetical protein
LOC_Os12g10630OsAffx.31685.1.S1_at11/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10630OsAffx.24770.1.S1_x_at1/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10640Os.16645.1.A1_at11/1112+5683582..5688883expressed protein
LOC_Os12g10650OsAffx.31686.1.S1_s_at11/1112+5691948..5695222expressed protein
LOC_Os12g10660Os.52538.1.S1_at11/1112+5698772..5701407Salt tolerance-like protein At1g78600, putative, expressed
LOC_Os12g10660Os.52538.1.S1_s_at11/1112+5698772..5701407Salt tolerance-like protein At1g78600, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31685.1.S1_at--645--4231Chr12:5674906..5674930 (25 bp)
CCGACGCGGATGGTGATGCCGCTGA
LOC_Os12g10630
OsAffx.31685.1.S1_at--154--4751Chr12:5674926..5674950 (25 bp)
GCTGAGCGCCATGCACACGTCGGAG
LOC_Os12g10630
OsAffx.31685.1.S1_at--125--1671Chr12:5674930..5674954 (25 bp)
AGCGCCATGCACACGTCGGAGTCGG
LOC_Os12g10630
OsAffx.31685.1.S1_at--430--1631Chr12:5675099..5675123 (25 bp)
AGCGCTTCTGCCAGGAGGTCGGCGT
LOC_Os12g10630
OsAffx.31685.1.S1_at--641--2471Chr12:5675309..5675333 (25 bp)
AACACATCAAGAAATCCGTTGACAA
LOC_Os12g10630
OsAffx.31685.1.S1_at--625--9291Chr12:5675323..5675347 (25 bp)
TCCGTTGACAACAAAAGCCTCATTT
LOC_Os12g10630
OsAffx.31685.1.S1_at--257--1671Chr12:5675338..5675362 (25 bp)
AGCCTCATTTCTAGCTTAGCTGCAT
LOC_Os12g10630
OsAffx.31685.1.S1_at--96--10311Chr12:5675345..5675369 (25 bp)
TTTCTAGCTTAGCTGCATTGCATTG
LOC_Os12g10630
OsAffx.31685.1.S1_at--1035--4811Chr12:5675374..5675398 (25 bp)
GCTCTACTACTGTTCCATCAAATTG
LOC_Os12g10630
OsAffx.31685.1.S1_at--461--3731Chr12:5675377..5675401 (25 bp)
CTACTACTGTTCCATCAAATTGATG
LOC_Os12g10630
OsAffx.31685.1.S1_at--445--3171Chr12:5675394..5675418 (25 bp)
AATTGATGCTTAATCCTCTCTCTCT
LOC_Os12g10630
Target Sequence 
CCGACGCGGATGGTGATGCCGCTGAGCGCCATGCACACGTCGGAGTCGGACGACGCCGCGGCGCGCCCCGGCGGCGGCGC
GGCGGCGAGGAAGCGGTTCCGGACCAAGTTCACGGCGGAGCAGAAGGCGCGGATGCTGGGGTTCGCCGAGGAGGTCGGGT
GGCGGCTGCAGAAGCTGGAGGACGCCGTCGTGCAGCGCTTCTGCCAGGAGGTCGGCGTCAAGCGCCGCGTCCTCAAGGTC
TGGATGCACAACAACAAGCACACCCTCGCCCGCCGCCACCTCCACCCCTCCCCCGCCGCCGCCGCCGGAGACGACGACGA
CGACGGCGCGCCGCCGCCGCACCCCGACCCCCGGCGGCGCGAGCTCGCCGCCGCCGCCGCACCACCTCCGGCTCCAGTAA
CCCAACACATCAAGAAATCCGTTGACAACAAAAGCCTCATTTCTAGCTTAGCTGCATTGCATTGCATTGCTCTACTACTG
TTCCATCAAATTGATGCTTAATCCTCTCTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis