Browse Element(s) Details


OsAffx.31816.1.S1_at

Description tigr:9640.m01969
TID=OsAffx.31816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1988011/11hypothetical protein
LOC_Os03g131103/11transposon protein, putative, Mariner sub-class
LOC_Os07g493402/11transposon protein, putative, Mariner sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19810OsAffx.14873.1.S1_at3/1112+11549274..11556321retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19810Os.45974.1.A1_at1/1112+11549274..11556321retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19820OsAffx.19753.1.S1_at9/1112+11557663..11558313retrotransposon, putative, centromere-specific
LOC_Os12g19830Os.40855.2.S1_x_at10/1112+11564348..11565343hypothetical protein
LOC_Os12g19830Os.40855.4.S1_x_at4/1112+11564348..11565343hypothetical protein
LOC_Os12g19830Os.40360.1.S1_x_at1/1112+11564348..11565343hypothetical protein
LOC_Os12g19830Os.40855.4.S1_at1/1112+11564348..11565343hypothetical protein
LOC_Os12g19840Os.40855.2.S1_x_at10/1112+11566359..11570473hypothetical protein
LOC_Os12g19840Os.40855.4.S1_x_at6/1112+11566359..11570473hypothetical protein
LOC_Os12g19840OsAffx.3900.1.S1_at5/1112+11566359..11570473hypothetical protein
LOC_Os12g19840Os.40855.4.S1_at2/1112+11566359..11570473hypothetical protein
LOC_Os12g19840Os.40360.1.S1_x_at1/1112+11566359..11570473hypothetical protein
LOC_Os12g19850NANA12+11571668..11572495hypothetical protein
LOC_Os12g19860OsAffx.19754.1.S1_at11/1112+11573253..11573882expressed protein
LOC_Os12g19870Os.26999.1.A1_at2/1112+11574561..11576807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19870OsAffx.828.1.S1_x_at1/1112+11574561..11576807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19880OsAffx.31816.1.S1_at11/1112+11580210..11580473hypothetical protein
LOC_Os12g19890OsAffx.31892.1.S1_x_at4/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19890OsAffx.31892.3.S1_at1/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19890OsAffx.6363.1.S1_at1/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19900NANA12+11587270..11593934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19910OsAffx.19755.1.S1_at11/1112+11600851..11602795hypothetical protein
LOC_Os12g19910Os.18113.1.S1_x_at1/1112+11600851..11602795hypothetical protein
LOC_Os12g19920NANA12+11604973..11609493retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31816.1.S1_at--963--5313Chr12:11580279..11580303 (25 bp)
GAAGGTGATGGGATCCCTGACCTTA
LOC_Os12g19880
OsAffx.31816.1.S1_at--246--772Chr12:11580286..11580310 (25 bp)
ATGGGATCCCTGACCTTAACTTGGA
LOC_Os12g19880
OsAffx.31816.1.S1_at--83--5851Chr12:11580297..11580321 (25 bp)
GACCTTAACTTGGATCCTGCTGTGA
LOC_Os12g19880
OsAffx.31816.1.S1_at--218--2071Chr12:11580304..11580328 (25 bp)
ACTTGGATCCTGCTGTGAAAGGAGA
LOC_Os12g19880
OsAffx.31816.1.S1_at--193--8073Chr12:11580324..11580348 (25 bp)
GGAGAAGATGCCTTCCAATATGAAG
LOC_Os12g19880
OsAffx.31816.1.S1_at--75--671Chr12:11580349..11580373 (25 bp)
ATGAAGAGCTTCCTGATAACCAATG
LOC_Os12g19880
OsAffx.31816.1.S1_at--777--5911Chr12:11580354..11580378 (25 bp)
GAGCTTCCTGATAACCAATGTTTTG
LOC_Os12g19880
OsAffx.31816.1.S1_at--562--4771Chr12:11580378..11580402 (25 bp)
GCTGCTCATGAAGATGGACAACCAG
LOC_Os12g19880
OsAffx.31816.1.S1_at--297--671Chr12:11580385..11580409 (25 bp)
ATGAAGATGGACAACCAGACCCTGC
LOC_Os12g19880
OsAffx.31816.1.S1_at--981--1371Chr12:11580401..11580425 (25 bp)
AGACCCTGCCATGCAAGTAGTTGAA
LOC_Os12g19880
OsAffx.31816.1.S1_at--1123--6931Chr12:11580417..11580441 (25 bp)
GTAGTTGAACTCTCCAATGGCTGGA
LOC_Os12g19880
Target Sequence 
GAAGGTGATGGGATCCCTGACCTTAACTTGGATCCTGCTGTGAAAGGAGAAGATGCCTTCCAATATGAAGATGAAGAGCT
TCCTGATAACCAATGTTTTGCTGCTCATGAAGATGGACAACCAGACCCTGCCATGCAAGTAGTTGAACTCTCCAATGGCT
GGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis