Browse Element(s) Details


OsAffx.32214.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=psaA
TID=OsAffx.32214.1
CNT=1
FEA=DNA_25
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PSI P700 apoprotein A1 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=PSI P700 apoprotein A1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1676011/11Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g3822911/11Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os01g5797411/11retrotransposon protein, putative, unclassified
LOC_Os10g2125010/11Photosystem I P700 chlorophyll a apoprotein A1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16720OsAffx.32221.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720Os.26596.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32220.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32219.1.S1_x_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32241.1.S1_x_at10/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16730Os.46404.1.S1_x_at5/114+9089112..9089957Photosystem Q, putative
LOC_Os04g16740OsAffx.30475.3.S1_s_at11/114+9103443..9105093ATP synthase alpha chain, putative, expressed
LOC_Os04g16750OsAffx.32212.1.S1_x_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750Os.26751.2.S1_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750OsAffx.32213.1.S1_s_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750OsAffx.32213.1.S1_x_at6/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0015979biological_processphotosynthesis
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009538cellular_componentphotosystem I reaction center
GO:0009539cellular_componentphotosystem II reaction center
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32214.1.S1_x_at--578--5015Chr10:20144505..20144529 (25 bp)
GCAGTTCCCGTTTGATACCCGATAA
LOC_Os10g38229
OsAffx.32214.1.S1_x_at--743--5495Chr10:20144577..20144601 (25 bp)
GAACATGTCAAGTATCCGCCTGGGA
LOC_Os10g38229
OsAffx.32214.1.S1_x_at--888--9297Chr12:24567071..24567095 (25 bp)
TCCGCCTGGGATCATGTTTTCTTAG
NONE
OsAffx.32214.1.S1_x_at--526--3977Chr12:24567123..24567160 (25 bp)
CGGTAGTCATTTTCCATTTCAGTTG
NONE
OsAffx.32214.1.S1_x_at--114--8336Chr10:20144769..20144793 (25 bp)
GGCTCCGAGATTTCTTGTGGGCACA
LOC_Os10g38229
OsAffx.32214.1.S1_x_at--140--835Chr10:20144817..20144841 (25 bp)
ATGGTTCTTCATTATCCGCATATGG
LOC_Os10g38229
OsAffx.32214.1.S1_x_at--1093--10436Chr10:20144852..20144876 (25 bp)
TTAGGTGCTCATTTTGTCTGGGCCT
LOC_Os10g38229
OsAffx.32214.1.S1_x_at--325--9776Chr10:20144883..20144907 (25 bp)
TAATGTTTTTATTCAGCGGCCGTGG
LOC_Os10g38229
OsAffx.32214.1.S1_x_at--375--5255Chr10:20144927..20144951 (25 bp)
GAATCTATCGTTTGGGCTCATAACA
LOC_Os10g38229
OsAffx.32214.1.S1_x_at--457--10495Chr10:20144954..20144978 (25 bp)
TTAAAAGTTGCTCCTGCTACTCAGC
LOC_Os10g38229
OsAffx.32214.1.S1_x_at--261--6935Chr10:20145011..20145035 (25 bp)
GTAGGAGTAACCCATTACCTTCTGG
LOC_Os10g38229
Target Sequence 
GCAGTTCCCGTTTGATACCCGATAAAGCAAATCTTGGTTTTCGCTTCCCTTGCGATGGGCCTGGGCGAGGGGGAACATGT
CAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAATTCCATTTCGGTAGTCATTTTCCATTTCAG
TTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCAC
AGAGTTCCATTACGATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCAGTCTTATGGTTCT
TCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCG
TGGTTATTGGCAAGAACTGATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAG
CCTTGAGCATTATACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32214.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis