Browse Element(s) Details


OsAffx.32228.1.A1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32228.1
CNT=1
FEA=DNA_29
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; psbG; PSII G protein (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g369941/11Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os01g673641/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36930NANA8+23229962..23235958retrotransposon protein, putative, unclassified
LOC_Os08g36940Os.31312.5.S1_x_at4/118+23236727..23239982retrotransposon protein, putative, unclassified
LOC_Os08g36940Os.31312.2.S1_x_at4/118+23236727..23239982retrotransposon protein, putative, unclassified
LOC_Os08g36950OsAffx.25952.1.S1_s_at1/118+23243195..23244703expressed protein
LOC_Os08g36960OsAffx.32149.4.S1_at11/118+23248961..23250595F-box domain containing protein, expressed
LOC_Os08g36970Os.57214.1.S1_at11/118+23251865..23252868expressed protein
LOC_Os08g36970Os.49767.1.S1_x_at1/118+23251865..23252868expressed protein
LOC_Os08g36980Os.24652.1.S1_at11/118+23254066..23255878DnaJ domain containing protein, expressed
LOC_Os08g36994Os.9963.1.S1_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.29567.1.S1_x_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994Os.55095.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.32228.1.A1_x_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.4334.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g37010OsAffx.6051.1.S1_at11/118+23270207..232713192-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37020OsAffx.6052.1.S1_at11/118+23271738..23274084expressed protein
LOC_Os08g37030OsAffx.17369.1.S1_at11/118+23275789..232767782-Hydroxyisoflavanone dehydratase, putative
LOC_Os08g37040Os.8320.1.S1_at11/118+23278717..23280057esterase, putative, expressed
LOC_Os08g37050OsAffx.17370.1.S1_at11/118+23284331..232852932-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37060Os.22819.1.S1_at10/118+23285897..232873602-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37070OsAffx.17371.1.S1_at11/118+23292694..23293014hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0006810biological_processtransport
GO:0009556biological_processmicrosporogenesis
GO:0009860biological_processpollen tube growth
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0005215molecular_functiontransporter activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32228.1.A1_x_at--853--60511Chr12:11283224..11283248 (25 bp)
GAGTTCGATCCTCAACTATTTCTCG
NONE
OsAffx.32228.1.A1_x_at--1017--20310Chr12:11283238..11283262 (25 bp)
ACTATTTCTCGCGATATCTTCTTAC
NONE
OsAffx.32228.1.A1_x_at--170--6796Chr12:11283271..11283295 (25 bp)
GTTAGGGCATCTATAACAGCCTCTG
NONE
OsAffx.32228.1.A1_x_at--908--2157Chr12:11283286..11283310 (25 bp)
ACAGCCTCTGGTTTAGGTGGGCAAC
NONE
OsAffx.32228.1.A1_x_at--1119--3916Chr12:11283312..11283336 (25 bp)
CGGCAAGTAGACGTCCACAGGAATT
NONE
OsAffx.32228.1.A1_x_at--385--9715Chr12:11283343..11283367 (25 bp)
TCAACTCCCCGAACAGTACTATAGG
NONE
OsAffx.32228.1.A1_x_at--938--5258Chr12:11283367..11283391 (25 bp)
GAATCCGTACTGAACATTCCACCAG
NONE
OsAffx.32228.1.A1_x_at--841--6878Chr12:11283420..11283444 (25 bp)
GTATTTTGGTTCAGGCATTTGCTCA
NONE
OsAffx.32228.1.A1_x_at--875--6135Chr12:11283460..11283484 (25 bp)
GAGGGAGCCATTTTCATTGTTACTG
NONE
OsAffx.32228.1.A1_x_at--84--3615Chr12:11283474..11283498 (25 bp)
CATTGTTACTGTACCGGCTGTTAAA
NONE
OsAffx.32228.1.A1_x_at--432--4919Chr12:11283508..11283532 (25 bp)
GCTTGCCTAGGACTTGATCTTGGTA
NONE
Target Sequence 
GAGTTCGATCCTCAACTATTTCTCGCGATATCTTCTTACGAAGTTTTGTTAGGGCATCTATAACAGCCTCTGGTTTAGGT
GGGCAACCCGGCAAGTAGACGTCCACAGGAATTAACTTATCAACTCCCCGAACAGTACTATAGGAATCCGTACTGAACAT
TCCACCAGTAATAGTACAAGCTCCCATAGCAATGACGTATTTTGGTTCAGGCATTTGCTCATATAATCTCACTAAAGAGG
GAGCCATTTTCATTGTTACTGTACCGGCTGTTAAAATTAGGTCCGCTTGCCTAGGACTTGATCTTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32228.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis