Browse Element(s) Details


OsAffx.4181.1.S1_at

Description tigr:9632.m05360
TID=OsAffx.4181.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5513011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein
LOC_Os04g55120Os.48263.1.S1_at5/114+32554329..32554895hypothetical protein
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55150Os.18254.1.A1_at11/114+32569674..32575089UBA/TS-N domain containing protein, expressed
LOC_Os04g55170NANA4+32578710..32578979Protease inhibitor/seed storage/LTP family protein
LOC_Os04g55180Os.12025.1.S1_a_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55180Os.54470.1.S1_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4181.1.S1_at--1058--771Chr04:32559028..32559052 (25 bp)
ATGTGCATTCACACGGGATGCGGCT
LOC_Os04g55130
OsAffx.4181.1.S1_at--497--8351Chr04:32558968..32558992 (25 bp)
GGCGGCTTCTTGACGAATGCTGGAA
LOC_Os04g55130
OsAffx.4181.1.S1_at--834--931Chr04:32558929..32558953 (25 bp)
AGGCACTGCCGTATGTTGTGGTTGC
LOC_Os04g55130
OsAffx.4181.1.S1_at--713--4731Chr04:32558902..32558926 (25 bp)
GCTGTCTTCTCCATAATTTTCTCAT
LOC_Os04g55130
OsAffx.4181.1.S1_at--567--9131Chr04:32558873..32558897 (25 bp)
TGCGGCGAACCGGATCCTGAGGAAA
LOC_Os04g55130
OsAffx.4181.1.S1_at--186--3151Chr04:32558850..32558874 (25 bp)
AATTCAGGAAGGTGCCGCTGCGGAA
LOC_Os04g55130
OsAffx.4181.1.S1_at--43--4131Chr04:32558835..32558859 (25 bp)
CGCTGCGGAACTATTTTCGGACTTT
LOC_Os04g55130
OsAffx.4181.1.S1_at--642--1331Chr04:32558785..32558809 (25 bp)
AGAGGATCAGGGATGTTCTCGCCGT
LOC_Os04g55130
OsAffx.4181.1.S1_at--716--9331Chr04:32558767..32558791 (25 bp)
TCGCCGTGCACTTAAGCCTGGTAAG
LOC_Os04g55130
OsAffx.4181.1.S1_at--155--7471Chr04:32558720..32558744 (25 bp)
GTGTGCTTCACAGTATTTCGCAATG
LOC_Os04g55130
OsAffx.4181.1.S1_at--941--3811Chr04:32558632..32558656 (25 bp)
CTCCATTGGAGCTGCTTCTGTCTAA
LOC_Os04g55130
Target Sequence 
ATGTGCATTCACACGGGATGCGGCTGGTGAGGAATGCATTTGGGCATGTGCGATCACGGTGGCGGCTTCTTGACGAATGC
TGGAAGGGTGAGTGCCAAGAGGCACTGCCGTATGTTGTGGTTGCTGGCTGTCTTCTCCATAATTTTCTCATCAAATGCGG
CGAACCGGATCCTGAGGAAATTCAGGAAGGTGCCGCTGCGGAACTATTTTCGGACTTTGAAGGAGAGAAAGACAAGGAAG
GAGAGAGGATCAGGGATGTTCTCGCCGTGCACTTAAGCCTGGTAAGCCGAAACCAGTGAAGAATTTATGTGTGCTTCACA
GTATTTCGCAATGTACATAGTAGTCTGTAGTCCCCCAGCATCGCATGGAATGCTTATGCAACTAATAATACTAAGCCTCC
ATTGGAGCTGCTTCTGTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis