Browse Element(s) Details


OsAffx.450.1.S1_at

Description gb:NM_194478.1
DB_XREF= gi:37530315
TID=OsAffx.450.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative pol polyprotein (OSJNBa0046L02.8), mRNA.
PROD=putative pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0112011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01120OsAffx.450.1.S1_at11/1110+89181..90171retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01134Os.11341.3.S1_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.3.S1_x_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.1.S1_a_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01150OsAffx.449.1.A1_at11/1110+101923..102590hypothetical protein
LOC_Os10g01150OsAffx.449.1.A1_x_at11/1110+101923..102590hypothetical protein
LOC_Os10g01164OsAffx.448.1.S1_x_at6/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.448.1.S1_at3/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.8127.1.S1_at1/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01180OsAffx.20631.1.S1_x_at2/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01180Os.33601.3.S1_x_at1/1110+112811..113521retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.450.1.S1_at--737--4551Chr10:90121..90141 (21 bp)
GCGCGCCATCGTCAATGCACGATTA
LOC_Os10g01120
OsAffx.450.1.S1_at--1069--5091Chr10:89760..89780 (21 bp)
GCACGATTAATAATGGCAAACCTGA
LOC_Os10g01120
OsAffx.450.1.S1_at--17--4291Chr10:89740..89764 (25 bp)
CCTGAAGGAGTTCTCATTGCTGAAA
LOC_Os10g01120
OsAffx.450.1.S1_at--14--991Chr10:89735..89759 (25 bp)
AGGAGTTCTCATTGCTGAAAAGCAG
LOC_Os10g01120
OsAffx.450.1.S1_at--496--10631Chr10:89704..89728 (25 bp)
TTCGAGAAGACCACTACTCTCTTTG
LOC_Os10g01120
OsAffx.450.1.S1_at--362--7651Chr10:89678..89702 (25 bp)
GGGATGGATTCGTAGCGTTCTTATC
LOC_Os10g01120
OsAffx.450.1.S1_at--369--6971Chr10:89667..89691 (25 bp)
GTAGCGTTCTTATCGATCGTCTAGT
LOC_Os10g01120
OsAffx.450.1.S1_at--531--4031Chr10:89409..89678 (25 bp)
CGATCGTCTAGTCGAGAGAAGTTTT
LOC_Os10g01120
OsAffx.450.1.S1_at--1094--9771Chr10:89286..89310 (25 bp)
TAAGGGCAATGATGGGCAGTCTAAT
LOC_Os10g01120
OsAffx.450.1.S1_at--763--2991Chr10:89279..89303 (25 bp)
AATGATGGGCAGTCTAATGCCAATG
LOC_Os10g01120
OsAffx.450.1.S1_at--582--10171Chr10:89219..89243 (25 bp)
TATAAACCTCAGCAGACCATCAACT
LOC_Os10g01120
Target Sequence 
GCGCGCCATCGTCAATGCACGATTAATAATGGCAAACCTGAAGGAGTTCTCATTGCTGAAAAGCAGAAAGAATTCGAGAA
GACCACTACTCTCTTTGTGGGATGGATTCGTAGCGTTCTTATCGATCGTCTAGTCGAGAGAAGTTTTGGTACTGCACTTA
AACACAAGAGACAGGAATACTCCGTTGAGGGATTTATAGCGTCTCTTGATGTTGAGGAGAAAGCTCAGGAAAAAGACGTC
GCGTCTAAGGGCAATGATGGGCAGTCTAATGCCAATGTTGTGCACAAGGCCCAAAACAAGAACAAAGAGAAATATAAACC
TCAGCAGACCATCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis