Browse Element(s) Details


OsAffx.4983.1.S1_at

Description tigr:9630.m05805
TID=OsAffx.4983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5817010/11hAT family dimerisation domain containing protein, expressed
LOC_Os03g311103/11AC transposase, putative, expressed
LOC_Os12g056601/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58180Os.51512.1.S1_at11/112+35603187..35604999expressed protein
LOC_Os02g58189NANA2+35610995..35611354NA
LOC_Os02g58200Os.23006.1.S1_at11/112+35615876..35616367expressed protein
LOC_Os02g58210Os.18195.1.S1_at11/112+35618268..35624929jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4983.1.S1_at--444--10033Chr12:2604619..2604643 (25 bp)
TAGTTTGGACCTCTCTTTTTCTGGG
LOC_Os12g05660
OsAffx.4983.1.S1_at--954--7692Chr02:35594229..35594253 (25 bp)
GGGTCAGATTCACTTCTATTCTGTT
LOC_Os02g58170
OsAffx.4983.1.S1_at--471--1312Chr02:35594277..35594298 (22 bp)
AGATGTTCTGGCACTGGCAATGACA
LOC_Os02g58170
OsAffx.4983.1.S1_at--907--131NONE
ATTACCATCAGTACAATGCCTACCT
NONE
OsAffx.4983.1.S1_at--836--9172Chr02:35596179..35596203 (25 bp)
TGCCTACCTTCACTGGTTTTACTAC
LOC_Os02g58170
OsAffx.4983.1.S1_at--345--10331Chr02:35596204..35596228 (25 bp)
TTTCATACAAGTCTTGCTCCTCTTG
LOC_Os02g58170
OsAffx.4983.1.S1_at--847--451Chr02:35596230..35596254 (25 bp)
ATCTCTTGTTGATGCTGCCTCCATG
LOC_Os02g58170
OsAffx.4983.1.S1_at--204--5931Chr02:35596963..35596987 (25 bp)
GAGCTTGTACTTATATTCGTGATTG
LOC_Os02g58170
OsAffx.4983.1.S1_at--212--2971Chr02:35597011..35597034 (24 bp)
AATGGATGCGTACCGCGATTAACGG
LOC_Os02g58170
OsAffx.4983.1.S1_at--454--732Chr02:35597436..35597460 (25 bp)
ATGTTGAATCCATTAGTACCTCCAT
LOC_Os02g58170
OsAffx.4983.1.S1_at--529--7151Chr02:35597573..35597597 (25 bp)
GTCGTTGAAGAACACACCTACTATG
LOC_Os02g58170
Target Sequence 
TAGTTTGGACCTCTCTTTTTCTGGGGGTCAGATTCACTTCTATTCTGTTAGATTGCTTTTAAATTCAATCCAAGATGTTC
TGGCACTGGCAATGACATTAAATCATTTGACATCTCAGGCAAATTACCATCAGTACAATGCCTACCTTCACTGGTTTTAC
TACTTTCATACAAGTCTTGCTCCTCTTGCATCTCTTGTTGATGCTGCCTCCATGTGTTTGGAGAAGGAGAGGAGCATGGT
GCTCTTGTGGAAAAATGCAAGAGCTTGTACTTATATTCGTGATTGCTTAGTGGGTGAATGCATTGTGAAATGGATGCGTA
CCGCGATTAACGGTATCAGAAAGGAGGCTGAGTGGTTGATTGAGAACTTGAAGCGTAATAATGTTGAATCCATTAGTACC
TCCATGAAGATTCGGCAATTTGCCTTAGATTTTTTGTGTGAGAAGTATGTTGAGTATGGATCATTTAAAAAGCAGGAGAG
CAGTGAAAGTGAAATGGCCTCTGAGAGTGATGAAGATGTCGTTGAAGAACACACCTACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis