Browse Element(s) Details


OsAffx.4983.2.S1_x_at

Description tigr:9630.m05804
TID=OsAffx.4983.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5815011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58180Os.51512.1.S1_at11/112+35603187..35604999expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4983.2.S1_x_at--105--9871Chr02:35582685..35582709 (25 bp)
TACAGCCTCATCGTTCGCGAGGAAG
LOC_Os02g58150
OsAffx.4983.2.S1_x_at--947--2951Chr02:35582742..35582766 (25 bp)
AATGGCCAAGAAGACGATCGTGACG
LOC_Os02g58150
OsAffx.4983.2.S1_x_at--986--951Chr02:35582767..35582791 (25 bp)
AGGACATTGAGCTGGTGATCCCACC
LOC_Os02g58150
OsAffx.4983.2.S1_x_at--214--551Chr02:35582784..35582808 (25 bp)
ATCCCACCGGTGTTCAATGGCTGCA
LOC_Os02g58150
OsAffx.4983.2.S1_x_at--843--3331Chr02:35582842..35582866 (25 bp)
CACGGGACCTCTACTGGGATGCAGT
LOC_Os02g58150
OsAffx.4983.2.S1_x_at--6--8191Chr02:35582935..35582959 (25 bp)
GGAACCCGTTTGTAGGAGAGCCTCA
LOC_Os02g58150
OsAffx.4983.2.S1_x_at--1118--971Chr02:35582948..35582972 (25 bp)
AGGAGAGCCTCACCTGGTTCTTGCT
LOC_Os02g58150
OsAffx.4983.2.S1_x_at--862--10551Chr02:35582965..35582989 (25 bp)
TTCTTGCTCAGGTGCTTCTGAACAT
LOC_Os02g58150
OsAffx.4983.2.S1_x_at--784--4611Chr02:35583105..35583129 (25 bp)
GCGATGCTGATCAAGGCCAAGGACA
LOC_Os02g58150
OsAffx.4983.2.S1_x_at--180--2931Chr02:35583123..35583147 (25 bp)
AAGGACAAGGATTGGCCGCACACCT
LOC_Os02g58150
OsAffx.4983.2.S1_x_at--358--10611Chr02:35583150..35583174 (25 bp)
TTCGGCATCCTCAGCATAGGGCTTG
LOC_Os02g58150
Target Sequence 
TACAGCCTCATCGTTCGCGAGGAAGAGATACACATAGCTCAACGAAAGCATAGCAACAATGGCCAAGAAGACGATCGTGA
CGAGGACATTGAGCTGGTGATCCCACCGGTGTTCAATGGCTGCACCCAGGTGCTCACCGCCGACGACCAGAAGGCGGCAC
GGGACCTCTACTGGGATGCAGTTTGCAGCGGCGGCGAGGACGAGACGGATTGGCGCAAGGTGGAGGAGATCCTGCGACGG
TGCATTGGCAGGAACCCGTTTGTAGGAGAGCCTCACCTGGTTCTTGCTCAGGTGCTTCTGAACATGGAGATGTATGAGGA
GGCAGAGGAGCAGATAGAGGCAGGGGTGAAGCTGTTGCTGGAGTGGGGGAGCAGCTGGGACAAGAGGATGCCATGGGAGG
CTTGGGTGTCATGGGGCAGGGCGATGCTGATCAAGGCCAAGGACAAGGATTGGCCGCACACCTCCTTCGGCATCCTCAGC
ATAGGGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4983.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis