Browse Element(s) Details


OsAffx.5163.1.S1_at

Description tigr:9634.m04977
TID=OsAffx.5163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5118011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51140Os.55440.1.S1_at11/116+30934756..30935614Zinc finger, C2H2 type family protein, expressed
LOC_Os06g51150Os.156.1.S1_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.1.A1_s_at11/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.156.2.S1_x_at10/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51150Os.39055.2.A1_x_at4/116+30943198..30947367Catalase isozyme B, putative, expressed
LOC_Os06g51160Os.28351.1.A1_a_at2/116+30947621..30950472Glycosyltransferase QUASIMODO1, putative
LOC_Os06g51170Os.27283.1.S1_at11/116+30952103..30955666serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os06g51180OsAffx.5163.1.S1_at11/116+30956573..30964056hypothetical protein
LOC_Os06g51180OsAffx.16016.1.S1_at10/116+30956573..30964056hypothetical protein
LOC_Os06g51180Os.11300.2.S1_at1/116+30956573..30964056hypothetical protein
LOC_Os06g51190Os.56657.1.S1_at10/116+30966321..30972488expressed protein
LOC_Os06g51200OsAffx.28206.1.S1_at11/116+30976912..30980048expressed protein
LOC_Os06g51210OsAffx.28207.1.S1_at11/116+30985741..30987363zinc finger family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5163.1.S1_at--25--3491Chr06:30956748..30956772 (25 bp)
CAGGATCGACACAACGCAACGTGTT
LOC_Os06g51180
OsAffx.5163.1.S1_at--591--7971Chr06:30956750..30956774 (25 bp)
GGATCGACACAACGCAACGTGTTTC
LOC_Os06g51180
OsAffx.5163.1.S1_at--961--511Chr06:30956752..30956776 (25 bp)
ATCGACACAACGCAACGTGTTTCTG
LOC_Os06g51180
OsAffx.5163.1.S1_at--85--5631Chr06:30956755..30956779 (25 bp)
GACACAACGCAACGTGTTTCTGCAA
LOC_Os06g51180
OsAffx.5163.1.S1_at--577--2211Chr06:30956758..30956782 (25 bp)
ACAACGCAACGTGTTTCTGCAATTG
LOC_Os06g51180
OsAffx.5163.1.S1_at--467--3251Chr06:30956759..30956783 (25 bp)
CAACGCAACGTGTTTCTGCAATTGA
LOC_Os06g51180
OsAffx.5163.1.S1_at--794--10311Chr06:30956771..30956795 (25 bp)
TTTCTGCAATTGATGGAAGCGGAGC
LOC_Os06g51180
OsAffx.5163.1.S1_at--734--5411Chr06:30956786..30956810 (25 bp)
GAAGCGGAGCGGGATGCCACAATCA
LOC_Os06g51180
OsAffx.5163.1.S1_at--150--1631Chr06:30956788..30956812 (25 bp)
AGCGGAGCGGGATGCCACAATCAAT
LOC_Os06g51180
OsAffx.5163.1.S1_at--454--4691Chr06:30956789..30956813 (25 bp)
GCGGAGCGGGATGCCACAATCAATT
LOC_Os06g51180
OsAffx.5163.1.S1_at--190--3091Chr06:30956806..30956830 (25 bp)
AATCAATTTGGAGGCAACCAGCGGC
LOC_Os06g51180
Target Sequence 
CAGGATCGACACAACGCAACGTGTTTCTGCAATTGATGGAAGCGGAGCGGGATGCCACAATCAATTTGGAGGCAACCAGC
GGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis