Browse Element(s) Details


OsAffx.6063.1.S1_at

Description tigr:9636.m03834
TID=OsAffx.6063.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3810011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38060Os.17417.1.S1_at11/118+23980164..23981409Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38070Os.56255.1.S1_x_at4/118+23984406..23985838hypothetical protein
LOC_Os08g38070OsAffx.23361.2.S1_x_at2/118+23984406..23985838hypothetical protein
LOC_Os08g38070Os.56255.1.S1_at1/118+23984406..23985838hypothetical protein
LOC_Os08g38080OsAffx.17392.2.S1_at11/118+23989017..23991063Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38086Os.23415.1.A1_s_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38086Os.10056.1.S1_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38092Os.56236.1.S1_at11/118+23997086..24001873expressed protein
LOC_Os08g38092OsAffx.9699.2.A1_at1/118+23997086..24001873expressed protein
LOC_Os08g38100OsAffx.6063.1.S1_at11/118+24004427..24005539expressed protein
LOC_Os08g38110NANA8+24010387..24011853UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os08g38120OsAffx.17399.3.S1_at11/118+24023969..24024706expressed protein
LOC_Os08g38130OsAffx.29583.2.S1_x_at11/118+24025733..24027009Cytokinin-O-glucosyltransferase 3, putative
LOC_Os08g38140OsAffx.17394.1.S1_at11/118+24028007..24028713expressed protein
LOC_Os08g38150Os.50889.1.S1_at2/118+24029333..24033190hypothetical protein
LOC_Os08g38150OsAffx.30891.1.S1_x_at1/118+24029333..24033190hypothetical protein
LOC_Os08g38150Os.27101.1.S1_at1/118+24029333..24033190hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6063.1.S1_at--222--4531Chr08:24005205..24005229 (25 bp)
GCTCCTCGACCCAGGCGGAGTGGGA
LOC_Os08g38100
OsAffx.6063.1.S1_at--603--4991Chr08:24005287..24005311 (25 bp)
GCAGGCCGTCCCAGAGGAGGTCGGT
LOC_Os08g38100
OsAffx.6063.1.S1_at--893--7731Chr08:24005309..24005333 (25 bp)
GGTGATGACCCGATTGGCGGCGTCG
LOC_Os08g38100
OsAffx.6063.1.S1_at--912--4011Chr08:24005329..24005353 (25 bp)
CGTCGGAGTTGTGGTACGTGTCCCA
LOC_Os08g38100
OsAffx.6063.1.S1_at--1134--3951Chr08:24005332..24005356 (25 bp)
CGGAGTTGTGGTACGTGTCCCAGAA
LOC_Os08g38100
OsAffx.6063.1.S1_at--852--10811Chr08:24005337..24005361 (25 bp)
TTGTGGTACGTGTCCCAGAAGACGA
LOC_Os08g38100
OsAffx.6063.1.S1_at--909--9912Chr08:24005343..24005367 (25 bp)
TACGTGTCCCAGAAGACGAACGCCT
LOC_Os08g38100
OsAffx.6063.1.S1_at--881--7232Chr08:24005348..24005372 (25 bp)
GTCCCAGAAGACGAACGCCTTGCGG
LOC_Os08g38100
OsAffx.6063.1.S1_at--426--2772Chr08:24005355..24005379 (25 bp)
AAGACGAACGCCTTGCGGTCGCTGC
LOC_Os08g38100
OsAffx.6063.1.S1_at--414--2612Chr08:24005361..24005385 (25 bp)
AACGCCTTGCGGTCGCTGCAGGGCC
LOC_Os08g38100
OsAffx.6063.1.S1_at--738--1072Chr08:24005380..24005404 (25 bp)
AGGGCCGCGAGTTCGGCAGGCACAG
LOC_Os08g38100
Target Sequence 
GCTCCTCGACCCAGGCGGAGTGGGACGACGGCGCGGTTGGCGGCGTCGGAGGTGGTGGCAGCGCCCCTGCTCCCGGCGCT
CGGCAGGCCGTCCCAGAGGAGGTCGGTGATGACCCGATTGGCGGCGTCGGAGTTGTGGTACGTGTCCCAGAAGACGAACG
CCTTGCGGTCGCTGCAGGGCCGCGAGTTCGGCAGGCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis