Browse Element(s) Details


OsAffx.6510.1.S1_at

Description tigr:9637.m03213
TID=OsAffx.6510.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus receptor-like kinase RLK11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3780011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37760Os.26925.1.S1_at11/119+21751269..21757050Bromodomain containing protein, expressed
LOC_Os09g37770OsAffx.6509.1.S1_at11/119+21759179..21759571hypothetical protein
LOC_Os09g37780OsAffx.30177.3.S1_at11/119+21761277..21764879D-mannose binding lectin family protein
LOC_Os09g37790Os.49232.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.56251.1.S1_x_at11/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.23910.2.A1_at6/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790Os.45982.1.A1_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37790OsAffx.18435.1.S1_x_at1/119+21772267..21777539D-mannose binding lectin family protein, expressed
LOC_Os09g37800OsAffx.6510.1.S1_at11/119+21778729..21782005D-mannose binding lectin family protein
LOC_Os09g37810OsAffx.6511.1.S1_at11/119+21782574..21784157D-mannose binding lectin family protein
LOC_Os09g37820Os.35344.18.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820Os.35344.3.S1_x_at10/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37820OsAffx.22940.5.S1_x_at2/119+21785250..21790320transposon protein, putative, Mutator sub-class
LOC_Os09g37830OsAffx.30178.1.S1_at11/119+21795432..21796306hypothetical protein
LOC_Os09g37840OsAffx.30180.4.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.18038.1.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.4.S1_x_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.2.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.3.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840Os.10719.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6510.1.S1_at--585--2391Chr09:21779464..21779488 (25 bp)
AAACTAGTAATGCTTTGCTGGACTC
LOC_Os09g37800
OsAffx.6510.1.S1_at--274--3911Chr09:21779447..21779471 (25 bp)
CTGGACTCGGAGATGAGGCCCAAAA
LOC_Os09g37800
OsAffx.6510.1.S1_at--1082--291Chr09:21779195..21779219 (25 bp)
ATAGCTTCGGTGTCTTACTCTTGGA
LOC_Os09g37800
OsAffx.6510.1.S1_at--848--6371Chr09:21779139..21779163 (25 bp)
GATCGCATTATGGACTTTCCTAACC
LOC_Os09g37800
OsAffx.6510.1.S1_at--309--1771Chr09:21778964..21778988 (25 bp)
ACCTGAATATCACCGAGAGCTGCAC
LOC_Os09g37800
OsAffx.6510.1.S1_at--461--1371Chr09:21778949..21778973 (25 bp)
AGAGCTGCACTCTGGATGAGGCCTT
LOC_Os09g37800
OsAffx.6510.1.S1_at--8--8891Chr09:21778933..21778957 (25 bp)
TGAGGCCTTGCTTTGCATTCATGTA
LOC_Os09g37800
OsAffx.6510.1.S1_at--307--9071Chr09:21778920..21778944 (25 bp)
TGCATTCATGTAGGGCTCTTGTGTG
LOC_Os09g37800
OsAffx.6510.1.S1_at--1079--5951Chr09:21778842..21778866 (25 bp)
GAGAATGGAAGCACCACACTGCCAA
LOC_Os09g37800
OsAffx.6510.1.S1_at--307--2271Chr09:21778813..21778837 (25 bp)
AAATCACCCTGCATATTTTGCTCCA
LOC_Os09g37800
OsAffx.6510.1.S1_at--325--1351Chr09:21778764..21778788 (25 bp)
AGAGACAATGTCTTCAACTCTGGGA
LOC_Os09g37800
Target Sequence 
AAACTAGTAATGCTTTGCTGGACTCGGAGATGAGGCCCAAAATAGCAGACTTTGGTATGGCACGCATATTTGGTGACAAC
CAACAGAATGCCAATACTAGAAGAGTTGTTGGAACATATGGCTACATGGCTCCTGAATATGCAATGGAGGGAATGTTTTC
TGTCAAGACTGACATCTATAGCTTCGGTGTCTTACTCTTGGAGGTTATCAGTGGTGTGAAAATAAGCAATATTGATCGCA
TTATGGACTTTCCTAACCTTATAGTCTATGCATGGAGCCTTTGGATGGAAGGGAGGGCAAAGGAGCTGGTAGACCTGAAT
ATCACCGAGAGCTGCACTCTGGATGAGGCCTTGCTTTGCATTCATGTAGGGCTCTTGTGTGTTCAGGAAAATCCTGATGA
CAGGCCACTCATGTCTTCTGTTGTGTCCATCTTGGAGAATGGAAGCACCACACTGCCAACCCCAAATCACCCTGCATATT
TTGCTCCAAGGAAAAATGGGGCAGATCAGAGAAGAGACAATGTCTTCAACTCTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis