Browse Element(s) Details


OsAffx.6993.1.S1_at

Description tigr:9639.m00346
TID=OsAffx.6993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0434011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04300Os.46781.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.6654.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.51841.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.24379.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.45902.1.A1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04310NANA11+1794376..1795923Cytochrome P450 family protein
LOC_Os11g04320OsAffx.31572.1.S1_at11/1111+1797789..1799337phosphoglycerate mutase family protein, expressed
LOC_Os11g04330Os.56229.1.S1_at11/1111+1800185..1801663Kelch motif family protein, expressed
LOC_Os11g04340OsAffx.6993.1.S1_at11/1111+1804515..1805027hypothetical protein
LOC_Os11g04350Os.50916.1.S1_at11/1111+1807130..1808535HSR203J, putative, expressed
LOC_Os11g04360OsAffx.19482.2.S1_x_at11/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360OsAffx.19482.1.S1_at5/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360Os.5943.1.S1_at1/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04370Os.23431.1.A1_at11/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_s_at10/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_at2/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04380Os.55139.1.S1_at11/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04380OsAffx.19217.1.S1_x_at2/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04400Os.53517.2.S1_at1/1111+1828395..1831070GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6993.1.S1_at--470--4651Chr11:1804942..1804966 (25 bp)
GCGTGGAGAAAGAGGCCTCCCCGCC
LOC_Os11g04340
OsAffx.6993.1.S1_at--64--1391Chr11:1804806..1804830 (25 bp)
AGACGGAATCGGTGTACCTCAACCT
LOC_Os11g04340
OsAffx.6993.1.S1_at--568--2511Chr11:1804762..1804786 (25 bp)
AACTTCACCTCCTGGATCGTCGAGA
LOC_Os11g04340
OsAffx.6993.1.S1_at--191--9672Chr12:1735633..1735655 (23 bp)
TCACCTCCTGGATCGTCGAGACGAA
NONE
OsAffx.6993.1.S1_at--245--9371Chr11:1804743..1804767 (25 bp)
TCGAGACGAAGATGCGGCCGCGCAA
LOC_Os11g04340
OsAffx.6993.1.S1_at--1057--2791Chr11:1804735..1804759 (25 bp)
AAGATGCGGCCGCGCAAATCTGGCA
LOC_Os11g04340
OsAffx.6993.1.S1_at--822--8491Chr11:1804715..1804739 (25 bp)
TGGCAGCTCAGCGACGTCTGCCGGT
LOC_Os11g04340
OsAffx.6993.1.S1_at--1068--3811Chr11:1804698..1804722 (25 bp)
CTGCCGGTCTCCATCATGGGAGGAG
LOC_Os11g04340
OsAffx.6993.1.S1_at--937--3972Chr12:1735501..1735522 (22 bp)
CGGTGGCCGTCATCGGGCGACGTCA
NONE
OsAffx.6993.1.S1_at--95--8391Chr11:1804608..1804632 (25 bp)
GGCGACGTCACCTCGGCTTGTTGAG
LOC_Os11g04340
OsAffx.6993.1.S1_at--667--5991Chr11:1804580..1804604 (25 bp)
GAGACGATCATGGTTCTTGACGACG
LOC_Os11g04340
Target Sequence 
GCGTGGAGAAAGAGGCCTCCCCGCCTCCTCCCTCCCCGTGCGCGCTCGCCGTTGGACTCCCCACTCCCCTCGCCGGCCGT
CCCGCTCGCGACTGGGAGGGCAAGGTGGAGGAGGTCACCGTCGGTCCAAAGGGAGGAGACGGAATCGGTGTACCTCAACC
TGCGCGTCGCCGCCGTCTCCAACTTCACCTCCTGGATCGTCGAGACGAAGATGCGGCCGCGCAAATCTGGCAGCTCAGCG
ACGTCTGCCGGTCTCCATCATGGGAGGAGGCAGGAGGAGGACCCAACGCCAACGAGGGCAGTGGTGGGAGATGGCGGGGC
GGTGGCCGTCATCGGGCGACGTCACCTCGGCTTGTTGAGGAGGAGACGATCATGGTTCTTGACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis