Browse Element(s) Details


OsAffx.8183.1.S1_at

Description gb:NM_196220.1
DB_XREF= gi:37533799
TID=OsAffx.8183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0019N10.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2435011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24310OsAffx.16111.1.S1_at11/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_at6/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_x_at4/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22699.1.S1_x_at2/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22896.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310Os.51348.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24320NANA10+12129267..12130807hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_x_at11/1110+12131141..12131983hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_at8/1110+12131141..12131983hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_at9/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_x_at8/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_at7/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_x_at4/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.3.S1_at3/1110+12142372..12143487hypothetical protein
LOC_Os10g24340Os.4760.1.S1_at1/1110+12142372..12143487hypothetical protein
LOC_Os10g24350OsAffx.8183.1.S1_at11/1110+12144589..12145302transposon protein, putative, unclassified
LOC_Os10g24360OsAffx.20409.1.S1_at11/1110+12147842..12148734hypothetical protein
LOC_Os10g24360OsAffx.23458.1.S1_x_at1/1110+12147842..12148734hypothetical protein
LOC_Os10g24370Os.46493.2.S1_x_at10/1110+12149339..12156009expressed protein
LOC_Os10g24370Os.3577.1.S1_x_at1/1110+12149339..12156009expressed protein
LOC_Os10g24380NANA10+12157106..12159806hypothetical protein
LOC_Os10g24390OsAffx.20408.1.S1_at10/1110+12166429..12167286hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8183.1.S1_at--1115--5511Chr10:12144827..12144851 (25 bp)
GAAAAGAGGCGGTGGTCCTCAGCTC
LOC_Os10g24350
OsAffx.8183.1.S1_at--812--2431Chr10:12144828..12144852 (25 bp)
AAAAGAGGCGGTGGTCCTCAGCTCA
LOC_Os10g24350
OsAffx.8183.1.S1_at--807--2331Chr10:12144829..12144853 (25 bp)
AAAGAGGCGGTGGTCCTCAGCTCAT
LOC_Os10g24350
OsAffx.8183.1.S1_at--680--2791Chr10:12144830..12144854 (25 bp)
AAGAGGCGGTGGTCCTCAGCTCATC
LOC_Os10g24350
OsAffx.8183.1.S1_at--57--1331Chr10:12144831..12144855 (25 bp)
AGAGGCGGTGGTCCTCAGCTCATCC
LOC_Os10g24350
OsAffx.8183.1.S1_at--622--7491Chr10:12144838..12144862 (25 bp)
GTGGTCCTCAGCTCATCCCGGGTGA
LOC_Os10g24350
OsAffx.8183.1.S1_at--64--7271Chr10:12144841..12144865 (25 bp)
GTCCTCAGCTCATCCCGGGTGATGG
LOC_Os10g24350
OsAffx.8183.1.S1_at--39--9671Chr10:12144845..12144869 (25 bp)
TCAGCTCATCCCGGGTGATGGCGGC
LOC_Os10g24350
OsAffx.8183.1.S1_at--649--4671Chr10:12144991..12145015 (25 bp)
GCGGGAGGAAGTCCGAGGCAGCGAC
LOC_Os10g24350
OsAffx.8183.1.S1_at--495--5331Chr10:12144998..12145022 (25 bp)
GAAGTCCGAGGCAGCGACGGAGGGC
LOC_Os10g24350
OsAffx.8183.1.S1_at--535--7571Chr10:12145182..12145206 (25 bp)
GGGCGTGGGAGACCCGGCTGCCTTC
LOC_Os10g24350
Target Sequence 
GAAAAGAGGCGGTGGTCCTCAGCTCATCCCGGGTGATGGCGGCGACGAAGGAGGCGGCCGGAGCGGAGGGAGGTGGTGGC
GCGGCTCGGGTCAACGGGGACGGCGGCGTTCCGGCGGTCGACGGGCTCGGCGTGGTGGTGGACGACGTCGGCGGCGGCGC
CGAGGCGGGAGGAAGTCCGAGGCAGCGACGGAGGGCGGCTGGAGCACGGCGGCGACGGCGGAGAGAGAGGGCGACGGCGC
GGGCTCGATTCCGATGGGGAGGCTGGGCGGCAAACGGCGGAAACGGACAAGGGAGGTACGGGGAGGGTTTGTATGGGATC
GGGGACGAGAGAGGGCGGCCGGAGGAGGGGGAAACGGGCGTGGGAGACCCGGCTGCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis