Browse Element(s) Details


OsAffx.8916.1.S1_at

Description gb:NM_193741.1
DB_XREF= gi:34914565
GEN=P0455H0310.15
TID=OsAffx.8916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0455H0310.15 (P0455H0310.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3251011/11transposon protein, putative, unclassified
LOC_Os07g183903/11retrotransposon protein, putative, unclassified
LOC_Os04g257703/11hypothetical protein
LOC_Os08g156702/11hypothetical protein
LOC_Os06g246602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32470OsAffx.30013.4.S1_at11/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.2.S1_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.1.S1_x_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32480OsAffx.11284.2.S1_s_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32480OsAffx.11284.2.S1_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32490OsAffx.20020.1.S1_x_at1/111+18144621..18145564hypothetical protein
LOC_Os01g32500Os.20851.1.A1_x_at2/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32500Os.55580.1.S1_at1/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32510OsAffx.8916.1.S1_x_at11/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.8916.1.S1_at11/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.13772.1.S1_at2/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.19035.2.S1_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.15536.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.13772.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.19035.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.26939.1.S1_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32520OsAffx.11285.1.S1_at11/111+18163752..18164312hypothetical protein
LOC_Os01g32530Os.26886.1.S1_x_at4/111+18167816..18170579transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32530Os.26886.3.S1_x_at3/111+18167816..18170579transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32540NANA1+18173084..18173380hypothetical protein
LOC_Os01g32550OsAffx.16467.1.S1_at8/111+18173655..18176696hypothetical protein
LOC_Os01g32550Os.26886.6.S1_s_at6/111+18173655..18176696hypothetical protein
LOC_Os01g32550Os.26886.2.S1_s_at5/111+18173655..18176696hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8916.1.S1_at--463--6131Chr01:18156612..18156750 (25 bp)
GAGGGAGCTGCTCGCTGGGGAATAC
LOC_Os01g32510
OsAffx.8916.1.S1_at--72--7611Chr01:18156595..18156619 (25 bp)
GGGAATACGGTGTCATGACCACCAT
LOC_Os01g32510
OsAffx.8916.1.S1_at--295--5231Chr01:18156593..18156617 (25 bp)
GAATACGGTGTCATGACCACCATCC
LOC_Os01g32510
OsAffx.8916.1.S1_at--534--7431Chr01:18156586..18156610 (25 bp)
GTGTCATGACCACCATCCCCGTTAA
LOC_Os01g32510
OsAffx.8916.1.S1_at--237--3031Chr01:18155691..18155715 (25 bp)
AATCCTGAGGAGTTGACGGCCGGAT
LOC_Os01g32510
OsAffx.8916.1.S1_at--571--7934Chr07:10893701..10893902 (25 bp)
GGATACATCTCGTGGACTCCCGCAG
LOC_Os07g18390
OsAffx.8916.1.S1_at--879--336Chr07:10893703..10893904 (25 bp)
ATACATCTCGTGGACTCCCGCAGAG
LOC_Os07g18390
OsAffx.8916.1.S1_at--697--9876Chr07:10893704..10893905 (25 bp)
TACATCTCGTGGACTCCCGCAGAGA
LOC_Os07g18390
OsAffx.8916.1.S1_at--289--1251Chr01:18155469..18155493 (25 bp)
AGATTGATGATCTGGCGAAATCGAT
LOC_Os01g32510
OsAffx.8916.1.S1_at--484--8851Chr01:18155465..18155489 (25 bp)
TGATGATCTGGCGAAATCGATGGCG
LOC_Os01g32510
OsAffx.8916.1.S1_at--642--711Chr01:18155463..18155487 (25 bp)
ATGATCTGGCGAAATCGATGGCGCC
LOC_Os01g32510
Target Sequence 
GAGGGAGCTGCTCGCTGGGGAATACGGTGTCATGACCACCATCCCCGTTAACCCGGACAAGTTCTCGCTGACGTCGTCAC
TCGCGGAGCTGGCGACGGCGATGGGGGCGATCCCCTCCAAACATGCAGCCAGGATCGGCGAGGAGACGTCCAACGGGATC
TACACCGGGGCGTGCCACGTCCTCGCGTGCATGAGGTTGGCGCACCCTGATCTTGACCTTAAGAAGGTTTTCGATCAGGG
GGCCGCCGATGACGCGCGTCGGGGCGTGATGGAGGAGACGAAGCTCGAGGTGGCCGAACTCGAGAAGACCATGGTGGAGG
TGAAGAAAGACCAGGCCGTGGAAGCCCTCAGAGGTCGCGAGGTGTGGTTCAACTCGTACCTCAAGAGCTGCTGCACGGCA
ATGGCTGGAGTCTGCAGGGAGCTTCGAGTTCCTCGCGGGAATCCTGAGGAGTTGACGGCCGGATACATCTCGTGGACTCC
CGCAGAGATTGATGATCTGGCGAAATCGATGGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis