Browse Element(s) Details


OsAffx.8916.1.S1_x_at

Description gb:NM_193741.1
DB_XREF= gi:34914565
GEN=P0455H0310.15
TID=OsAffx.8916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0455H0310.15 (P0455H0310.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3251011/11transposon protein, putative, unclassified
LOC_Os04g117202/11retrotransposon protein, putative, unclassified
LOC_Os05g179801/11hypothetical protein
LOC_Os04g257701/11hypothetical protein
LOC_Os06g312401/11retrotransposon protein, putative, unclassified
LOC_Os11g171601/11transposon protein, putative, unclassified
LOC_Os07g183901/11retrotransposon protein, putative, unclassified
LOC_Os06g031501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32470OsAffx.30013.4.S1_at11/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.2.S1_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32470OsAffx.30013.1.S1_x_at1/111+18129997..18131149Zinc knuckle family protein
LOC_Os01g32480OsAffx.11284.2.S1_s_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32480OsAffx.11284.2.S1_at11/111+18135705..18136100athila transposon protein, putative
LOC_Os01g32490OsAffx.20020.1.S1_x_at1/111+18144621..18145564hypothetical protein
LOC_Os01g32500Os.20851.1.A1_x_at2/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32500Os.55580.1.S1_at1/111+18147056..18153265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32510OsAffx.8916.1.S1_x_at11/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.8916.1.S1_at11/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.13772.1.S1_at2/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.19035.2.S1_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.15536.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.13772.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.19035.1.S1_x_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32510OsAffx.26939.1.S1_at1/111+18154010..18158473transposon protein, putative, unclassified
LOC_Os01g32520OsAffx.11285.1.S1_at11/111+18163752..18164312hypothetical protein
LOC_Os01g32530Os.26886.1.S1_x_at4/111+18167816..18170579transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32530Os.26886.3.S1_x_at3/111+18167816..18170579transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32540NANA1+18173084..18173380hypothetical protein
LOC_Os01g32550OsAffx.16467.1.S1_at8/111+18173655..18176696hypothetical protein
LOC_Os01g32550Os.26886.6.S1_s_at6/111+18173655..18176696hypothetical protein
LOC_Os01g32550Os.26886.2.S1_s_at5/111+18173655..18176696hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8916.1.S1_x_at--71--7611Chr01:18156595..18156619 (25 bp)
GGGAATACGGTGTCATGACCACCAT
LOC_Os01g32510
OsAffx.8916.1.S1_x_at--535--7431Chr01:18156586..18156610 (25 bp)
GTGTCATGACCACCATCCCCGTTAA
LOC_Os01g32510
OsAffx.8916.1.S1_x_at--389--6771Chr01:18156566..18156590 (25 bp)
GTTAACCCGGACAAGTTCTCGCTGA
LOC_Os01g32510
OsAffx.8916.1.S1_x_at--224--6174Chr06:18173003..18173027 (25 bp)
GAGGTTGGCGCACCCTGATCTTGAC
LOC_Os06g31240
OsAffx.8916.1.S1_x_at--539--10872Chr04:6401492..6401516 (25 bp)
TTGGCGCACCCTGATCTTGACCTTA
LOC_Os04g11720
OsAffx.8916.1.S1_x_at--736--3233Chr06:1171606..1171661 (24 bp)
CAAGAGCTGCTGCACGGCAATGGCT
LOC_Os06g03150
OsAffx.8916.1.S1_x_at--236--3031Chr01:18155691..18155715 (25 bp)
AATCCTGAGGAGTTGACGGCCGGAT
LOC_Os01g32510
OsAffx.8916.1.S1_x_at--572--7934Chr07:10893701..10893902 (25 bp)
GGATACATCTCGTGGACTCCCGCAG
LOC_Os07g18390
OsAffx.8916.1.S1_x_at--396--3991Chr01:18155484..18155505 (22 bp)
CGTGGACTCCCGCAGAGATTGATGA
LOC_Os01g32510
OsAffx.8916.1.S1_x_at--288--1251Chr01:18155469..18155493 (25 bp)
AGATTGATGATCTGGCGAAATCGAT
LOC_Os01g32510
OsAffx.8916.1.S1_x_at--643--711Chr01:18155463..18155487 (25 bp)
ATGATCTGGCGAAATCGATGGCGCC
LOC_Os01g32510
Target Sequence 
GGGAATACGGTGTCATGACCACCATCCCCGTTAACCCGGACAAGTTCTCGCTGACGTCGTCACTCGCGGAGCTGGCGACG
GCGATGGGGGCGATCCCCTCCAAACATGCAGCCAGGATCGGCGAGGAGACGTCCAACGGGATCTACACCGGGGCGTGCCA
CGTCCTCGCGTGCATGAGGTTGGCGCACCCTGATCTTGACCTTAAGAAGGTTTTCGATCAGGGGGCCGCCGATGACGCGC
GTCGGGGCGTGATGGAGGAGACGAAGCTCGAGGTGGCCGAACTCGAGAAGACCATGGTGGAGGTGAAGAAAGACCAGGCC
GTGGAAGCCCTCAGAGGTCGCGAGGTGTGGTTCAACTCGTACCTCAAGAGCTGCTGCACGGCAATGGCTGGAGTCTGCAG
GGAGCTTCGAGTTCCTCGCGGGAATCCTGAGGAGTTGACGGCCGGATACATCTCGTGGACTCCCGCAGAGATTGATGATC
TGGCGAAATCGATGGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8916.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis