Browse Element(s) Details


Os.10123.2.S1_x_at

Description gb:NM_190872.1
DB_XREF= gi:34908827
GEN=P0684C02.5
TID=Os.10123.2
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684C02.5 (P0684C02.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0684C02.5 (P0684C02.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5811410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10123.2.S1_x_at--410--151Chr01:33938279..33938542 (25 bp)
ATTAGATGCTCATGTGGTTGCCTCT
LOC_Os01g58114
Os.10123.2.S1_x_at--528--7911Chr01:33938264..33938288 (25 bp)
GGTTGCCTCTGTGATGACTATGTGG
LOC_Os01g58114
Os.10123.2.S1_x_at--446--5471NONE
GAACTAAGGGTCTTGATCTACCTGA
NONE
Os.10123.2.S1_x_at--98--10191Chr01:33937074..33937098 (25 bp)
TATACTGATGGCCAGTCTGCTTCTT
LOC_Os01g58114
Os.10123.2.S1_x_at--1139--7471Chr01:33937049..33937073 (25 bp)
GTGTGGCTTACGTCCTTATGATGTA
LOC_Os01g58114
Os.10123.2.S1_x_at--689--3211Chr01:33937024..33937048 (25 bp)
CAAGGAGGCTGGACTCTTTGACCCA
LOC_Os01g58114
Os.10123.2.S1_x_at--176--6331Chr01:33936706..33936730 (25 bp)
GATGCTTACAGCCTCAACTTTTTTG
LOC_Os01g58114
Os.10123.2.S1_x_at--778--8291Chr01:33936666..33936690 (25 bp)
GGCTTCCCGTGTGGTGCAACAAAGA
LOC_Os01g58114
Os.10123.2.S1_x_at--527--8571Chr01:33936584..33936608 (25 bp)
TGGATACAACACCATGCAGCCGTAC
LOC_Os01g58114
Os.10123.2.S1_x_at--1017--3351Chr01:33936568..33936592 (25 bp)
CAGCCGTACCCTCACATGAATGAAA
LOC_Os01g58114
Os.10123.2.S1_x_at--445--5271Chr01:33936551..33936575 (25 bp)
GAATGAAAGGTGTCCTTCTCTGCCT
LOC_Os01g58114
Target Sequence 
ATTAGATGCTCATGTGGTTGCCTCTGTGATGACTATGTGGNACAAACTTCAACCAGAGTATGCTGCCAACATGTGGAAAG
AAGCCCTTAACAAACGGCTTGGAACTAAGGGTCTTGATCTACCTGAAATCATAGTGGAATCAGAGAAGCGTGGGATGACA
TTTGACAAATTGCTAACAGTTCCTGAGCAAGATAAGTGGGTCTATACTGATGGCCAGTCTGCTTCTTGTGTGGCTTACGT
CCTTATGATGTACAAGGAGGCTGGACTCTTTGACCCANTTGCCAGCTCTATAGAAGTTACTGAATTCACCATAAAAGATG
CTTACAGCCTCAACTTTTTTGAGAACAATATGACACGGCTTCCCGTGTGGTGCAACAAAGATGACAGTGTCAAGCTCCCC
TTCTGCCAAATAAAGGGCAGGTATCGAATGGAGTTGCCTGGATACAACACCATGCAGCCGTACCCTCACATGAATGAAAG
GTGTCCTTCTCTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10123.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis