Browse Element(s) Details


Os.10545.1.S1_at

Description gb:AK101993.1
DB_XREF= gi:32987202
TID=Os.10545.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079H04, full insert sequence.
FL= gb:AK101993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3877711/11molybdenum cofactor sulfurase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein
LOC_Os09g38759Os.14296.1.S1_at10/119+22272465..22274489Dihydroneopterin aldolase, putative, expressed
LOC_Os09g38768Os.25141.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38768OsAffx.6520.1.S1_x_at11/119+22274793..22277382LEM3 family/CDC50 family protein, expressed
LOC_Os09g38777Os.9868.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38777Os.10545.1.S1_at11/119+22277811..22283715molybdenum cofactor sulfurase family protein, putative, expressed
LOC_Os09g38790Os.37725.1.A1_s_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38790Os.8410.1.S1_at11/119+22286696..22291247Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38800OsAffx.30194.2.S1_at11/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38800OsAffx.30194.1.S1_x_at1/119+22291930..22295105wall-associated kinase-like 1, putative
LOC_Os09g38814OsAffx.21820.1.S1_at2/119+22298687..22299046NA
LOC_Os09g38814OsAffx.21820.1.S1_x_at1/119+22298687..22299046NA
LOC_Os09g38830OsAffx.18050.1.S1_at11/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830OsAffx.30194.1.S1_x_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830Os.50240.1.S1_at1/119+22302503..22309699Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009408biological_processresponse to heat
GO:0009688biological_processabscisic acid biosynthesis
GO:0009734biological_processauxin mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0018315biological_processmolybdenum incorporation into molybdenum-molybdopterin complex
GO:0008265molecular_functionMo-molybdopterin cofactor sulfurase activity
GO:0009000molecular_functionselenocysteine lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10545.1.S1_at--470--8731Chr09:22282586..22282610 (25 bp)
TGTCATCCATACTCGGAGGATCTGT
LOC_Os09g38777
Os.10545.1.S1_at--846--7391Chr09:22282659..22283139 (25 bp)
GTGATCGTTGCAAGGTGCCTACTAT
LOC_Os09g38777
Os.10545.1.S1_at--331--9531Chr09:22283182..22283206 (25 bp)
TCTACAAGCACTCCGGTCTGATGAA
LOC_Os09g38777
Os.10545.1.S1_at--532--9471Chr09:22283198..22283222 (25 bp)
TCTGATGAAGTGTTGCGGCCGAGCC
LOC_Os09g38777
Os.10545.1.S1_at--36--971Chr09:22283487..22283511 (25 bp)
AGGAGGGCACAGTGGCAACCGTTCA
LOC_Os09g38777
Os.10545.1.S1_at--839--7071Chr09:22283519..22283543 (25 bp)
GTAATAGGTCGATTTATGCGCGCAT
LOC_Os09g38777
Os.10545.1.S1_at--486--611Chr09:22283534..22283558 (25 bp)
ATGCGCGCATGGATGTAAATCTTAC
LOC_Os09g38777
Os.10545.1.S1_at--617--2411Chr09:22283621..22283645 (25 bp)
AAAAATGTTGCCCATACAGTCGATG
LOC_Os09g38777
Os.10545.1.S1_at--882--3451Chr09:22283637..22283661 (25 bp)
CAGTCGATGGTTTTTCAGTGATCAC
LOC_Os09g38777
Os.10545.1.S1_at--503--1971Chr09:22283660..22283684 (25 bp)
ACTGTTGTGCAGTTACCTGTACTTT
LOC_Os09g38777
Os.10545.1.S1_at--627--1291Chr09:22283689..22283713 (25 bp)
AGATGTTACCTCGATTGCCTTTATG
LOC_Os09g38777
Target Sequence 
TGTCATCCATACTCGGAGGATCTGTGGAAGACCATAAAGATAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCG
TTGCAAGGTGCCTACTATTAATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCTG
ATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCG
GCAAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCC
AGCATGAGCAAGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATCTT
ACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTGGCACTGAAAAATGTTGCCCATA
CAGTCGATGGTTTTTCAGTGATCACTGTTGTGCAGTTACCTGTACTTTCANCAGATGTTACCTCGATTGCCTTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis