Browse Element(s) Details


Os.12164.2.S1_x_at

Description gb:NM_187476.1
DB_XREF= gi:34902037
GEN=OJ1364E02.17
TID=Os.12164.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12164 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative SERINETHREONINE PROTEIN PHOSPHATASE PP1 (OJ1364E02.17), mRNA.
PROD=putative SERINETHREONINE PROTEIN PHOSPHATASEPP1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1611011/11Serine/threonine protein phosphatase PP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16080Os.32299.1.S1_at11/113+8845017..8848272Mitochondrial carrier protein, expressed
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12164.2.S1_x_at--551--10751Chr03:8866094..8866118 (25 bp)
TTGGAAACAATATGCCTCCTCCTTG
LOC_Os03g16110
Os.12164.2.S1_x_at--554--2971Chr03:8866226..8866250 (25 bp)
AATGTGCGTCTATGGAAGGTCTTCA
LOC_Os03g16110
Os.12164.2.S1_x_at--597--10411Chr03:8866301..8866325 (25 bp)
TTATGCATGCATGGTGGCCTCTCTC
LOC_Os03g16110
Os.12164.2.S1_x_at--403--3771Chr03:8866319..8866343 (25 bp)
CTCTCTCCTGATCTGACACATTTAG
LOC_Os03g16110
Os.12164.2.S1_x_at--520--8891Chr03:8866345..8866369 (25 bp)
TGAGATAAAGAGCTTGCCCCGTCCT
LOC_Os03g16110
Os.12164.2.S1_x_at--936--6271Chr03:8866373..8866397 (25 bp)
GATGTACCGGATACAGGTCTGCTAT
LOC_Os03g16110
Os.12164.2.S1_x_at--1070--7691Chr03:8866458..8866482 (25 bp)
GGGTCTCATACACTTTTGGTGCTGA
LOC_Os03g16110
Os.12164.2.S1_x_at--806--8911Chr03:8866510..8866534 (25 bp)
TGACCTTGATCTTATTTGCCGGGCA
LOC_Os03g16110
Os.12164.2.S1_x_at--818--10691Chr03:8866525..8866634 (25 bp)
TTGCCGGGCACATCAGGTTGTTGAG
LOC_Os03g16110
Os.12164.2.S1_x_at--420--7951Chr03:8866638..8866662 (25 bp)
GGATATGAGTTCTTTGCCGACAGAC
LOC_Os03g16110
Os.12164.2.S1_x_at--25--5631Chr03:8866660..8866684 (25 bp)
GACAACTTGTCACCATATTCTCAGC
LOC_Os03g16110
Target Sequence 
TTGGAAACAATATGCCTCCTCCTTGCATACAAAATCAAGTACCCGGAGAATTTTTTTCTTCTCAGAGGCAATCATGAGTG
TGCATCAATAAACAGGATATATGGATTTTATGATGAATGCAAACGCCGATTTAATGTGCGTCTATGGAAGGTCTTCACTG
ATTGTTTTAACTGTCTCCCTGTGGCTGCGCTAATTGATGATAAAATATTATGCATGCATGGTGGCCTCTCTCCTGATCTG
ACACATTTAGATGAGATAAAGAGCTTGCCCCGTCCTACTGATGTACCGGATACAGGTCTGCTATGCGACCTACTTTGGTC
AGATCCAGGAAAAGACGTTCAAGGTTGGGGCATGAATGATAGGGGGGTCTCATACACTTTTGGTGCTGACAAAGTTTCAG
AATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAGGTTGTTGAGGATGGATATGAGTTCTTTGCCGAC
AGACAACTTGTCACCATATTCTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12164.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis