Browse Element(s) Details


Os.12306.1.S1_at

Description gb:AK106977.1
DB_XREF= gi:32992186
TID=Os.12306.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0565A07.22 (P0565A07.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H03, full insert sequence.
FL= gb:AK106977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g134403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13400OsAffx.22421.2.S1_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13400OsAffx.16244.1.S1_x_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13420OsAffx.22947.2.S1_x_at11/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.1.S1_x_at7/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.3.S1_x_at5/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.5.S1_x_at3/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13430Os.27435.1.S1_x_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.27435.1.S1_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46985.1.S1_x_at2/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_at1/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13440Os.12306.1.S1_at3/117+7706895..7707119hypothetical protein
LOC_Os07g13450Os.25193.1.S1_at10/117+7708866..7709367expressed protein
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12306.1.S1_at--444--6151Chr07:7707145..7707169 (25 bp)
GAGGTGCCCGTCGATCATCTGTGAA
NONE
Os.12306.1.S1_at--843--7211Chr07:7707136..7707160 (25 bp)
GTCGATCATCTGTGAAGCTAGCTAT
NONE
Os.12306.1.S1_at--1070--10191Chr07:7707114..7707138 (25 bp)
TATATTAGCTCGGATCGCCATGGCG
NONE
Os.12306.1.S1_at--508--5591Chr07:7706993..7707017 (25 bp)
GAAATCGGCTACACGACCATGAACC
LOC_Os07g13440
Os.12306.1.S1_at--971--1851Chr07:7706968..7706992 (25 bp)
ACGACGACATCCCTGGAACACCAAA
LOC_Os07g13440
Os.12306.1.S1_at--716--4111Chr07:7706922..7706946 (25 bp)
CGCAAACACGTACACGCGTGGATGT
LOC_Os07g13440
Os.12306.1.S1_at--586--771Chr07:7706866..7706890 (25 bp)
ATGTCGCGAGATGTCATGCATGATC
NONE
Os.12306.1.S1_at--176--5391Chr07:7706828..7706852 (25 bp)
GAAGCTTGCAATCACGTTCGATTGG
NONE
Os.12306.1.S1_at--287--10491Chr07:7706802..7706826 (25 bp)
TTAAACTTCGTTTGGTGCTCTAGGG
NONE
Os.12306.1.S1_at--1072--7631Chr07:7706779..7706803 (25 bp)
GGGAGCTTTTCAACAATATAATTCA
NONE
Os.12306.1.S1_at--743--5691Chr07:7706722..7706746 (25 bp)
GACTTCTATATATCTCTACTATCAC
NONE
Target Sequence 
GAGGTGCCCGTCGATCATCTGTGAAGCTAGCTATATTAGCTCGGATCGCCATGGCGAAAGCTAGGGTGAACCTGACCGTC
GTCGTCGGCCTGTCCCTGGTGGCTCTCCTCGTCCTCACCGCCGTCGAGGATGTCGGCGTCTCCGCCGACAATNGAAATCG
GCTACACGACCATGAACCACGACGACATCCCTGGAACACCAAAGCTCCTCCACCCCGGCGGTCCCGCAAACACGTACACG
CGTGGATGTGAGAAAGAACAGGATTGCAGGGATTAGCAGGATGTCGCGAGATGTCATGCATGATCGATCGATCCCACTNG
AAGCTTGCAATCACGTTCGATTGGATTAAACTTCGTTTGGTGCTCTAGGGGAGCTTTTCAACAATATAATTCATATAGCA
GTATATTTTTATTTGAGTTAGTAATGACTTCTATATATCTCTACTATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis